Zobrazeno 1 - 10
of 22
pro vyhledávání: '"Ben J. Ward"'
Autor:
Jackie Lighten, Alexander S. T. Papadopulos, Ryan S. Mohammed, Ben J. Ward, Ian G. Paterson, Lyndsey Baillie, Ian R. Bradbury, Andrew P. Hendry, Paul Bentzen, Cock van Oosterhout
Publikováno v:
Nature Communications, Vol 8, Iss 1, Pp 1-11 (2017)
Host-parasite coevolution can lead to arms races favouring novel immunogenetic alleles or the maintenance of diversity in a balanced polymorphism. Here, Lighten et al. combine data on MHC diversity across three guppy species and simulations to show t
Externí odkaz:
https://doaj.org/article/db49789d941e4957b4eb89088657f6bb
Publikováno v:
F1000Research, Vol 8 (2019)
The Sequence Distance Graph (SDG) framework works with genome assembly graphs and raw data from paired, linked and long reads. It includes a simple deBruijn graph module, and can import graphs using the graphical fragment assembly (GFA) format. It al
Externí odkaz:
https://doaj.org/article/15a2dbd7a0a44edc96c72f5c173e404c
Autor:
Jackie Lighten, Danny Incarnato, Ben J. Ward, Cock van Oosterhout, Ian Bradbury, Mark Hanson, Paul Bentzen
Publikováno v:
Royal Society Open Science, Vol 3, Iss 10 (2016)
The relative importance of genetic versus epigenetic changes in adaptive evolution is a hotly debated topic, with studies showing that some species appear to be able to adapt rapidly without significant genetic change. Epigenetic mechanisms may be pa
Externí odkaz:
https://doaj.org/article/d86ed928d1a84332ae273f50c1faf5e9
Autor:
Justin A. Pachebat, Cock van Oosterhout, Johanna L. Nader, Guy Robinson, Ben J. Ward, Kevin M. Tyler, Rachel M. Chalmers, Martin T. Swain, Thomas C. Mathers, Paul R. Hunter
Publikováno v:
Nature Microbiology. 4:826-836
Human cryptosporidiosis is the leading protozoan cause of diarrhoeal mortality worldwide, and a preponderance of infections is caused by Cryptosporidium hominis and C. parvum. Both species consist of several subtypes with distinct geographical distri
Autor:
Ben J. Ward, Katie Baker, Edgar Huitema, Jonathan D. G. Jones, Miles R. Armstrong, Agathe Jouet, Tze-Yin Lim, Paul R. J. Birch, Gaetan Thilliez, Ingo Hein, Cock van Oosterhout
Publikováno v:
The New Phytologist
Summary The oomycete pathogens Phytophthora infestans and P. capsici cause significant crop losses world‐wide, threatening food security. In each case, pathogenicity factors, called RXLR effectors, contribute to virulence. Some RXLRs are perceived
Publikováno v:
Bioinformatics (Oxford, England). 36(14)
Summary Robust, flexible and fast software to read, write and manipulate macromolecular structures is a prerequisite for productively doing structural bioinformatics. We present BioStructures.jl, the first dedicated package in the Julia programming l
Autor:
Ingo Hein, Agathe Jouet, Oliver J. Furzer, Eric B. Holub, Florian Jupe, Cock van Oosterhout, Jonathan D. G. Jones, Volkan Cevik, Diane G. O. Saunders, Mark McMullan, Gaetan Thilliez, Ben J. Ward
• Physiological races of the oomycete Albugo candida are biotrophic pathogens of diverse plant species, primarily the Brassicaceae, and cause infections that suppress host immunity to other pathogens. However, A. candida race diversity and the cons
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0b8f4c49fe3503f96361395f2b3ff8be
http://wrap.warwick.ac.uk/110557/1/WRAP-Albugo-candida-race-diversity-ploidy-host-associated-microbes-revealed-Holub-2018.pdf
http://wrap.warwick.ac.uk/110557/1/WRAP-Albugo-candida-race-diversity-ploidy-host-associated-microbes-revealed-Holub-2018.pdf
Autor:
Ben J. Ward, Cock van Oosterhout
Publikováno v:
Molecular Ecology Resources. 16:534-539
HYBRIDCHECK is a software package to visualize the recombination signal in large DNA sequence data set, and it can be used to analyse recombination, genetic introgression, hybridization and horizontal gene transfer. It can scan large (multiple kb) co
Autor:
Kerstin Howe, Thomas M. Keane, Paul Flicek, David Thybert, Bronwen Aken, David Martín-Gálvez, Golbahar Yazdanifar, Christine Feig, Cristina Sisu, Duncan T. Odom, Son Pham, Stefanie Nachtweide, Laura Clarke, Ian Streeter, Carla Cummins, Varshith Chakrapani, Lilue Jingtao, Cock van Oosterhout, Ian T. Fiddes, Alvis Brazma, David J. Adams, William Chow, Frédéric Veyrunes, Maša Roller, Mikhail Kolmogorov, Christina M. Laukaitis, Ambre Aurore Josselin, Matthew Howell, Fergal J. Martin, Klara Stefflova, Benedict Paten, Mario Stanke, Matthieu Muffato, Mark Gerstein, Leo Goodstadt, Fengtang Yang, Michael A. Quail, Anthony G. Doran, Václav Janoušek, Ben J. Ward, Sarah Aldridge, Amonida Zadissa, Fabio C. P. Navarro, Robert C. Karn, Matthew Dunn, Wasiu Akanni
Publikováno v:
Genome Research
Genome Research, Cold Spring Harbor Laboratory Press, 2018, 28 (4), pp.448-459. ⟨10.1101/gr.234096.117⟩
Genome Research, 2018, 28 (4), pp.448-459. ⟨10.1101/gr.234096.117⟩
Genome Research, Cold Spring Harbor Laboratory Press, 2018, 28 (4), pp.448-459. ⟨10.1101/gr.234096.117⟩
Genome Research, 2018, 28 (4), pp.448-459. ⟨10.1101/gr.234096.117⟩
Understanding the mechanisms driving lineage-specific evolution in both primates and rodents has been hindered by the lack of sister clades with a similar phylogenetic structure having high-quality genome assemblies. Here, we have created chromosome-
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::609fd04d943fa94511f96a605cf6355f
https://www.repository.cam.ac.uk/handle/1810/279898
https://www.repository.cam.ac.uk/handle/1810/279898
Autor:
Johanna L, Nader, Thomas C, Mathers, Ben J, Ward, Justin A, Pachebat, Martin T, Swain, Guy, Robinson, Rachel M, Chalmers, Paul R, Hunter, Cock, van Oosterhout, Kevin M, Tyler
Publikováno v:
Nature microbiology. 4(5)
Human cryptosporidiosis is the leading protozoan cause of diarrhoeal mortality worldwide, and a preponderance of infections is caused by Cryptosporidium hominis and C. parvum. Both species consist of several subtypes with distinct geographical distri