Zobrazeno 1 - 10
of 15
pro vyhledávání: '"Ben Ernest"'
Autor:
Claire Weber, Marissa B. Hirst, Ben Ernest, Nicholas J. Schaub, Kelli M. Wilson, Ke Wang, Hannah M. Baskir, Pei-Hsuan Chu, Carlos A. Tristan, Ilyas Singeç
Publikováno v:
Cell Rep Methods
SEQUIN is a web-based application (app) that allows fast and intuitive analysis of RNA sequencing data derived for model organisms, tissues, and single cells. Integrated app functions enable uploading datasets, quality control, gene set enrichment, d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::daecb1e19c707ca760e8a78f8bb2a4fd
https://europepmc.org/articles/PMC10088091/
https://europepmc.org/articles/PMC10088091/
Autor:
Maryellen de Mars, Cu Nguyen, Tiffany Hung, Eric Peters, Charles Lu, Meijian Guan, Bao Tran, Maurizio Polano, Bin Zhu, Samir Lababidi, Wendell D. Jones, Chunlin Xiao, Andreas Scherer, K J. Langenbach, Zhipan Li, Luyao Ren, Weida Tong, Erich Jaeger, Rebecca Kusko, Zivana Tezak, Ying Yu, Ulrika Liljedahl, Louis M. Staudt, Huixiao Hong, Jing Wang, Yuanting Zheng, Ali Moshrefi, Cristobal Juan Vera, Chris Miller, Rasika Kalamegham, Arati Raziuddin, Howard Jacob, Roberta Maestro, Bindu Swapna Madala, Petr Vojta, Jessica Nordlund, Li Tai Fang, Jiri Drabek, Xuelu Liu, Corey Miles, Gary P. Schroth, Fayaz Seifuddin, Tim R. Mercer, Chunhua Yan, Leihong Wu, Sulev Kõks, Roderick V. Jensen, Jennifer A Hipp, Yun-Ching Chen, Malcolm Moos, Yongmei Zhao, Baitang Ning, Aparna Natarajan, Brian N. Papas, Xin Chen, Ashley Walton, Stephen T. Sherry, Christopher E. Mason, Liz Kerrigan, Ogan D Abaan, Wanqiu Chen, Kenneth Idler, Jingya Wang, Tsai-wei Shen, James C. Willey, Ene Reimann, Justin B. Lack, Virginie Petitjean, Jyoti Shetty, Daoud Meerzaman, Charles Wang, Jian-Liang Li, Tiffany Truong, Keyur Talsania, Mehdi Pirooznia, Marc Sultan, Urvashi Mehra, Wenming Xiao, Zhong Chen, Ana Granat, Leming Shi, Margaret C. Cam, Qing-Rong Chen, Eric F. Donaldson, Wolfgang Resch, Ben Ernest, Yuliya Kriga, Gokhan Yavas, Thomas M. Blomquist, Parthav Jailwala
Publikováno v:
Nat Biotechnol
Clinical applications of precision oncology require accurate tests that can distinguish true cancer-specific mutations from errors introduced at each step of next-generation sequencing (NGS). To date, no bulk sequencing study has addressed the effect
Autor:
Bao Tran, Zhaowei Yang, Xin Chen, Hannah Choi, Monika Mehta, Wanqiu Chen, Jian-Liang Li, Yingtao Bi, Xiaojiang Xu, Yongmei Zhao, Andrew Farmer, Alain Mir, Vicky Ping Chen, Ben Ernest, Charles Wang, Parimal Kumar, Jing Li, Malcolm Moos, Urvashi Mehra, Wenming Xiao
Publikováno v:
Nature Biotechnology. 39:1103-1114
Comparing diverse single-cell RNA sequencing (scRNA-seq) datasets generated by different technologies and in different laboratories remains a major challenge. Here we address the need for guidance in choosing algorithms leading to accurate biological
Autor:
Seungmi Ryu, Claire Weber, Pei-Hsuan Chu, Carlos A. Tristan, Ben Ernest, Vukasin M. Jovanovic, Tao Deng, Jaroslav Slamecka, Hyenjong Hong, John Braisted, Marissa Hirst, Anton Simeonov, Ty C. Voss, Ilyas Singeç
Embryoid bodies (EBs) and self-organizing organoids derived from human pluripotent stem cells (hPSCs) recapitulate tissue development in a dish and hold great promise for disease modeling and drug development. However, current protocols are hampered
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1d556d68c287ac0a0fd3b382ff6eefd8
https://doi.org/10.1101/2022.03.21.485225
https://doi.org/10.1101/2022.03.21.485225
Autor:
Claire Weber, Marissa B. Hirst, Ben Ernest, Hannah M. Baskir, Pei-Hsuan Chu, Carlos A. Tristan, Ilyas Singeç
SEQUIN is a new web application (app) that allows fast and intuitive RNA-sequencing data analysis for organisms, tissues, and single cells. Integrated app functions enable uploading datasets, quality control, gene set enrichment, data visualization,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ea6b1d349a35c8864bbb7f640a628179
https://doi.org/10.1101/2022.02.23.481646
https://doi.org/10.1101/2022.02.23.481646
Publikováno v:
International Journal of Online and Biomedical Engineering, Vol 15, Iss 15, Pp 57-79 (2019)
Due to the rising number of heart patients and the apparent need for more robust electrocardiogram (ECG) monitoring of these patients, hospitals are increasingly investing in typical cloud technology or centralized hospital server based remote ECG mo
Autor:
Ben Ernest, Tessa M. Burch-Smith, Katharine A. Howell, Thomas Lane, Tyra N. McCray, Krzysztof Bobik, Jessica C. Fernandez, Margaret Staton
Publikováno v:
The Plant Journal. 91:114-131
INCREASED SIZE EXCLUSION LIMIT2 (ISE2) is a chloroplast-localized RNA helicase that is indispensable for proper plant development. Chloroplasts in leaves with reduced ISE2 expression have previously been shown to exhibit reduced thylakoid contents an
Autor:
Wanqiu, Chen, Yongmei, Zhao, Xin, Chen, Zhaowei, Yang, Xiaojiang, Xu, Yingtao, Bi, Vicky, Chen, Jing, Li, Hannah, Choi, Ben, Ernest, Bao, Tran, Monika, Mehta, Parimal, Kumar, Andrew, Farmer, Alain, Mir, Urvashi Ann, Mehra, Jian-Liang, Li, Malcolm, Moos, Wenming, Xiao, Charles, Wang
Publikováno v:
Nature biotechnology. 39(9)
Comparing diverse single-cell RNA sequencing (scRNA-seq) datasets generated by different technologies and in different laboratories remains a major challenge. Here we address the need for guidance in choosing algorithms leading to accurate biological
Autor:
Margaret Staton, Sara R. Hardin, Elena E. Ganusova, Tessa M. Burch-Smith, Ben Ernest, Krzysztof Bobik, Jessica C. Fernandez
Publikováno v:
The New phytologist. 221(2)
Chloroplasts retain part of their ancestral genomes and the machinery for expression of those genomes. The nucleus-encoded chloroplast RNA helicase INCREASED SIZE EXCLUSION LIMIT2 (ISE2) is required for chloroplast ribosomal RNA processing and chloro
Publikováno v:
Developmental Biology. 403:57-68
Chromatin insulators orchestrate gene transcription during embryo development and cell differentiation by stabilizing interactions between distant genomic sites. Mutations in genes encoding insulator proteins are generally lethal, making in vivo func