Harmonizing the Generation and Pre-publication Stewardship of FAIR bioimage data.

Autor: Bialy N; Morgridge Institute for Research, Madison, USA., Alber F; University of California Los Angeles, USA., Andrews B; University of Toronto, Toronto Canada., Angelo M; Stanford University, Palo Alto, USA., Beliveau B; University of Washington, Seattle, USA., Bintu L; Stanford University, Palo Alto, USA., Boettiger A; Stanford University, Palo Alto, USA., Boehm U; Carl Zeiss AG, Oberkochen, Germany., Brown CM; McGill University, Montreal, Canada., Maina MB; University of Sussex, Sussex, UK and Yobe State University, Nigeria., Chambers JJ; University of Massachusetts, Amherst, USA., Cimini BA; Broad Institute of MIT and Harvard, Imaging Platform, Cambridge, USA., Eliceiri K; Morgridge Institute for Research, Madison, USA.; University of Wisconsin-Madison, Madison, USA., Errington R; Cardiff University, Cardiff, UK., Faklaris O; Univ. Montpellier, CNRS, INSERM, Montpellier, France., Gaudreault N; Allen Institute for Cell Science, Seattle, USA., Germain RN; National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, USA., Goscinski W; National Imaging Facility, Brisbane, Australia., Grunwald D; UMass Chan Medical School, Worcester, USA., Halter M; National Institute of Standards and Technology, Gaithersburg, USA., Hanein D; University of California, Santa Barbara, USA., Hickey JW; Duke University, Durham, USA., Lacoste J; MIA Cellavie Inc., Montreal, Canada., Laude A; Newcastle University, Newcastle upon Tyne, UK., Lundberg E; Stanford University, Palo Alto, USA.; SciLifeLab, KTH Royal Institute of Technology, Stockholm, Sweden., Ma J; Carnegie Mellon University, Pittsburgh, USA., Malacrida L; Institut Pasteur de Montevideo, & Universidad de la República, Montevideo, Uruguay., Moore J; German BioImaging-Gesellschaft für Mikroskopie und Bildanalyse e.V., Constance, Germany., Nelson G; Newcastle University, Newcastle upon Tyne, UK., Neumann EK; University of California, Davis, Davis, USA., Nitschke R; University of Freiburg, Freiburg, Germany., Onami S; RIKEN Center for Biosystems Dynamics Research, Kobe, Japan., Pimentel JA; Universidad Nacional Autónoma de México, Cuernavaca, México., Plant AL; National Institute of Standards and Technology, Gaithersburg, USA., Radtke AJ; National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, USA., Sabata B; Altos Labs, Redwood City, USA., Schapiro D; Heidelberg University Hospital, Heidelberg, Germany., Schöneberg J; University of California San Diego, San Diego, USA., Spraggins JM; Vanderbilt University School of Medicine, Nashville, USA., Sudar D; Quantitative Imaging Systems LLC, Portland, USA., Vierdag WAM; European Molecular Biology Laboratorium, Heidelberg, Baden-Württemberg, Germany., Volkmann N; University of California, Santa Barbara, USA., Wählby C; Uppsala University, Uppsala, Sweden., Wang SS; Yale University, New Haven, USA., Yaniv Z; National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, USA., Strambio-De-Castillia C; UMass Chan Medical School, Worcester, USA.

Publikováno v: ArXiv [ArXiv] 2024 Aug 30. Date of Electronic Publication: 2024 Aug 30.

Efficient and highly amplified imaging of nucleic acid targets in cellular and histopathological samples with pSABER.

Autor: Attar S; Department of Genome Sciences, University of Washington, Seattle, WA, USA.; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA., Browning VE; Department of Genome Sciences, University of Washington, Seattle, WA, USA., Krebs M; Department of Genome Sciences, University of Washington, Seattle, WA, USA., Liu Y; Department of Genome Sciences, University of Washington, Seattle, WA, USA., Nichols EK; Department of Genome Sciences, University of Washington, Seattle, WA, USA., Tsue AF; Department of Pharmacology, University of Washington, Seattle, WA, USA.; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Institute of Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA., Shechner DM; Department of Pharmacology, University of Washington, Seattle, WA, USA.; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Institute of Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA., Shendure J; Department of Genome Sciences, University of Washington, Seattle, WA, USA.; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Institute of Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA.; Allen Discovery Center for Cell Lineage Tracing, Seattle, WA, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA., Lieberman JA; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA., Schweppe DK; Department of Genome Sciences, University of Washington, Seattle, WA, USA.; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Institute of Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA., Akilesh S; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA. shreeram@uw.edu.; Kidney Research Institute, Seattle, WA, USA. shreeram@uw.edu., Beliveau BJ; Department of Genome Sciences, University of Washington, Seattle, WA, USA. beliveau@uw.edu.; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA. beliveau@uw.edu.; Institute of Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA. beliveau@uw.edu.

Publikováno v: Nature methods [Nat Methods] 2024 Nov 15. Date of Electronic Publication: 2024 Nov 15.

A guide to studying 3D genome structure and dynamics in the kidney.

Autor: Beliveau BJ; Department of Genome Sciences, University of Washington, Seattle, WA, USA., Akilesh S; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA. shreeram@uw.edu.

Publikováno v: Nature reviews. Nephrology [Nat Rev Nephrol] 2024 Oct 15. Date of Electronic Publication: 2024 Oct 15.

Recent advances in the synthesis of single-stranded DNA in vitro.

Autor: Li S; Frontiers Science Center for Synthetic Biology, Key Laboratory of Systems Bioengineering (MOE), School of Chemical Engineering and Technology, Tianjin University, Tianjin, P.R. China.; Zhejiang Institute of Tianjin University, Ningbo, Zhejiang, P.R. China., Tan W; Frontiers Science Center for Synthetic Biology, Key Laboratory of Systems Bioengineering (MOE), School of Chemical Engineering and Technology, Tianjin University, Tianjin, P.R. China.; Zhejiang Institute of Tianjin University, Ningbo, Zhejiang, P.R. China., Jia X; Frontiers Science Center for Synthetic Biology, Key Laboratory of Systems Bioengineering (MOE), School of Chemical Engineering and Technology, Tianjin University, Tianjin, P.R. China.; Zhejiang Institute of Tianjin University, Ningbo, Zhejiang, P.R. China., Miao Q; Frontiers Science Center for Synthetic Biology, Key Laboratory of Systems Bioengineering (MOE), School of Chemical Engineering and Technology, Tianjin University, Tianjin, P.R. China.; Zhejiang Institute of Tianjin University, Ningbo, Zhejiang, P.R. China., Liu Y; Frontiers Science Center for Synthetic Biology, Key Laboratory of Systems Bioengineering (MOE), School of Chemical Engineering and Technology, Tianjin University, Tianjin, P.R. China.; Zhejiang Institute of Tianjin University, Ningbo, Zhejiang, P.R. China., Yang D; Frontiers Science Center for Synthetic Biology, Key Laboratory of Systems Bioengineering (MOE), School of Chemical Engineering and Technology, Tianjin University, Tianjin, P.R. China.; Zhejiang Institute of Tianjin University, Ningbo, Zhejiang, P.R. China.

Publikováno v: Biotechnology journal [Biotechnol J] 2024 Apr; Vol. 19 (4), pp. e2400026.

Spatially organized cellular communities form the developing human heart.

Autor: Farah EN; Department of Medicine, Division of Cardiology, University of California San Diego, La Jolla, CA, USA., Hu RK; Department of Medicine, Division of Cardiology, University of California San Diego, La Jolla, CA, USA., Kern C; Center for Epigenomics, Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA., Zhang Q; Department of Medicine, Division of Cardiology, University of California San Diego, La Jolla, CA, USA., Lu TY; Materials Science and Engineering Program, University of California San Diego, La Jolla, CA, USA., Ma Q; Department of Medicine, Division of Cardiology, University of California San Diego, La Jolla, CA, USA., Tran S; Department of Medicine, Division of Cardiology, University of California San Diego, La Jolla, CA, USA., Zhang B; Department of Medicine, Division of Cardiology, University of California San Diego, La Jolla, CA, USA.; Department of Bioengineering, University of California San Diego, La Jolla, CA, USA., Carlin D; Department of Medicine, Division of Cardiology, University of California San Diego, La Jolla, CA, USA., Monell A; Center for Epigenomics, Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA., Blair AP; Department of Medicine, Division of Cardiology, University of California San Diego, La Jolla, CA, USA., Wang Z; Department of Medicine, Division of Cardiology, University of California San Diego, La Jolla, CA, USA., Eschbach J; Center for Epigenomics, Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA., Li B; Department of Cellular and Molecular Medicine, School of Medicine, University of California San Diego, La Jolla, CA, USA., Destici E; Department of Medicine, Division of Cardiology, University of California San Diego, La Jolla, CA, USA., Ren B; Center for Epigenomics, Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Department of Cellular and Molecular Medicine, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Ludwig Institute for Cancer Research, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Evans SM; Department of Medicine, Division of Cardiology, University of California San Diego, La Jolla, CA, USA.; Department of Pharmacology, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Chen S; Materials Science and Engineering Program, University of California San Diego, La Jolla, CA, USA.; Department of Bioengineering, University of California San Diego, La Jolla, CA, USA.; Department of NanoEngineering, University of California San Diego, La Jolla, CA, USA.; Institute of Engineering in Medicine, University of California San Diego, La Jolla, CA, USA., Zhu Q; Center for Epigenomics, Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA. quzhu@health.ucsd.edu., Chi NC; Department of Medicine, Division of Cardiology, University of California San Diego, La Jolla, CA, USA. nchi@health.ucsd.edu.; Department of Bioengineering, University of California San Diego, La Jolla, CA, USA. nchi@health.ucsd.edu.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA. nchi@health.ucsd.edu.; Institute of Engineering in Medicine, University of California San Diego, La Jolla, CA, USA. nchi@health.ucsd.edu.

Publikováno v: Nature [Nature] 2024 Mar; Vol. 627 (8005), pp. 854-864. Date of Electronic Publication: 2024 Mar 13.