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Akademický článek
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Akademický článek
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Autor:
Houfani, Aicha Asma, Větrovský, Tomáš, Navarrete, Oscar U., Štursová, Martina, Tláskal, Vojtěch, Beiko, Robert G., Boucherba, Nawel, Baldrian, Petr, Benallaoua, Said, Jorquera, Milko A.
Publikováno v:
Microbial Ecology, 2019 Apr 01. 77(3), 713-725.
Externí odkaz:
https://www.jstor.org/stable/48702322
We present efficient algorithms for computing a maximum agreement forest (MAF) of a pair of multifurcating (nonbinary) rooted trees. Our algorithms match the running times of the currently best algorithms for the binary case. The size of an MAF corre
Externí odkaz:
http://arxiv.org/abs/1305.0512
We present new and improved fixed-parameter algorithms for computing maximum agreement forests (MAFs) of pairs of rooted binary phylogenetic trees. The size of such a forest for two trees corresponds to their subtree prune-and-regraft distance and, i
Externí odkaz:
http://arxiv.org/abs/1108.2664
Autor:
Keddy, Alexander, Beiko, Robert G.
Publikováno v:
Global Ecology and Biogeography, 2018 Mar 01. 27(3/4), 380-388.
Externí odkaz:
https://www.jstor.org/stable/26635805
Genomes evolve as modules. In prokaryotes (and some eukaryotes), genetic material can be transferred between species and integrated into the genome via homologous or illegitimate recombination. There is little reason to imagine that the units of tran
Externí odkaz:
http://arxiv.org/abs/0709.2030
The widespread presence of antibiotic resistance and virulence among Staphylococcus isolates has been attributed to lateral genetic transfer (LGT) between different strains or species. However, there has been very little study of the extent of LGT in
Externí odkaz:
http://arxiv.org/abs/0709.2031
The transfer of genetic materials across species (lateral genetic transfer, LGT) contributes to genomic and physiological innovation in prokaryotes. The extent of LGT in prokaryotes has been examined in a number of studies, but the unit of transfer h
Externí odkaz:
http://arxiv.org/abs/0709.2027
Genetic recombination can produce heterogeneous phylogenetic histories within a set of homologous genes. Delineating recombination events is important in the study of molecular evolution, as inference of such events provides a clearer picture of the
Externí odkaz:
http://arxiv.org/abs/0709.1874