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The adapted Activity-By-Contact model for enhancer-gene assignment and its application to single-cell data.

Autor: Hecker D; Institute of Cardiovascular Regeneration, Goethe University Hospital.; Cardio-Pulmonary Institute, Goethe University.; German Centre for Cardiovascular Research, Partner site Rhine-Main, Frankfurt am Main 60590., Behjati Ardakani F; Institute of Cardiovascular Regeneration, Goethe University Hospital.; Cardio-Pulmonary Institute, Goethe University.; German Centre for Cardiovascular Research, Partner site Rhine-Main, Frankfurt am Main 60590., Karollus A; School of Computation, Information and Technology, Technical University of Munich, Garching 85748., Gagneur J; School of Computation, Information and Technology, Technical University of Munich, Garching 85748.; Institute of Human Genetics, Technical University of Munich, Munich 81675.; Computational Health Center, Helmholtz Center Munich, Neuherberg 85764.; Munich Data Science Institute, Technical University of Munich, Garching 85748, Germany., Schulz MH; Institute of Cardiovascular Regeneration, Goethe University Hospital.; Cardio-Pulmonary Institute, Goethe University.; German Centre for Cardiovascular Research, Partner site Rhine-Main, Frankfurt am Main 60590.

Publikováno v: Bioinformatics (Oxford, England) [Bioinformatics] 2023 Feb 03; Vol. 39 (2).

Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction.

Autor: Schmidt F; Cluster of Excellence for Multimodal Computing and Interaction, Saarland Informatics Campus, Saarland University, Saarbrücken, 66123, Germany.; Computational Biology & Applied Algorithmics, Max Planck Institute for Informatics, Saarland Informatics Campus, Saarbrücken, 66123, Germany., Gasparoni N; Department of Genetics, University of Saarland, Saarbrücken, 66123, Germany., Gasparoni G; Department of Genetics, University of Saarland, Saarbrücken, 66123, Germany., Gianmoena K; Leibniz Research Centre for Working Environment and Human Factors IfADo, Dortmund, 44139, Germany., Cadenas C; Leibniz Research Centre for Working Environment and Human Factors IfADo, Dortmund, 44139, Germany., Polansky JK; Experimental Rheumatology, German Rheumatism Research Centre, Berlin, 10117, Germany., Ebert P; Computational Biology & Applied Algorithmics, Max Planck Institute for Informatics, Saarland Informatics Campus, Saarbrücken, 66123, Germany.; International Max Planck Research School for Computer Science, Saarland Informatics Campus, Saarbrücken, 66123, Germany., Nordström K; Department of Genetics, University of Saarland, Saarbrücken, 66123, Germany., Barann M; Institute of Clinical Molecular Biology, Christian-Albrechts-University, Kiel, 24105, Germany., Sinha A; Institute of Clinical Molecular Biology, Christian-Albrechts-University, Kiel, 24105, Germany., Fröhler S; Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Berlin, 13092, Germany., Xiong J; Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Berlin, 13092, Germany., Dehghani Amirabad A; Cluster of Excellence for Multimodal Computing and Interaction, Saarland Informatics Campus, Saarland University, Saarbrücken, 66123, Germany.; Computational Biology & Applied Algorithmics, Max Planck Institute for Informatics, Saarland Informatics Campus, Saarbrücken, 66123, Germany.; International Max Planck Research School for Computer Science, Saarland Informatics Campus, Saarbrücken, 66123, Germany., Behjati Ardakani F; Cluster of Excellence for Multimodal Computing and Interaction, Saarland Informatics Campus, Saarland University, Saarbrücken, 66123, Germany.; Computational Biology & Applied Algorithmics, Max Planck Institute for Informatics, Saarland Informatics Campus, Saarbrücken, 66123, Germany., Hutter B; Applied Bioinformatics, Deutsches Krebsforschungszentrum, Heidelberg, 69120, Germany., Zipprich G; Data Management and Genomics IT, Deutsches Krebsforschungszentrum, Heidelberg, 69120, Germany., Felder B; Data Management and Genomics IT, Deutsches Krebsforschungszentrum, Heidelberg, 69120, Germany., Eils J; Data Management and Genomics IT, Deutsches Krebsforschungszentrum, Heidelberg, 69120, Germany., Brors B; Applied Bioinformatics, Deutsches Krebsforschungszentrum, Heidelberg, 69120, Germany., Chen W; Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Berlin, 13092, Germany., Hengstler JG; Leibniz Research Centre for Working Environment and Human Factors IfADo, Dortmund, 44139, Germany., Hamann A; International Max Planck Research School for Computer Science, Saarland Informatics Campus, Saarbrücken, 66123, Germany., Lengauer T; Computational Biology & Applied Algorithmics, Max Planck Institute for Informatics, Saarland Informatics Campus, Saarbrücken, 66123, Germany., Rosenstiel P; Institute of Clinical Molecular Biology, Christian-Albrechts-University, Kiel, 24105, Germany., Walter J; Department of Genetics, University of Saarland, Saarbrücken, 66123, Germany., Schulz MH; Cluster of Excellence for Multimodal Computing and Interaction, Saarland Informatics Campus, Saarland University, Saarbrücken, 66123, Germany mschulz@mmci.uni-saarland.de.; Computational Biology & Applied Algorithmics, Max Planck Institute for Informatics, Saarland Informatics Campus, Saarbrücken, 66123, Germany.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2017 Jan 09; Vol. 45 (1), pp. 54-66. Date of Electronic Publication: 2016 Nov 29.