3D genomics across the tree of life reveals condensin II as a determinant of architecture type.

Autor: Hoencamp C; Division of Gene Regulation, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., Dudchenko O; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA., Elbatsh AMO; Division of Gene Regulation, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., Brahmachari S; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA., Raaijmakers JA; Division of Cell Biology, Oncode Institute, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., van Schaik T; Division of Gene Regulation, Oncode Institute, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., Sedeño Cacciatore Á; Division of Gene Regulation, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., Contessoto VG; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; Department of Physics, Institute of Biosciences, Letters and Exact Sciences, São Paulo State University (UNESP), São José do Rio Preto - SP, 15054-000, Brazil., van Heesbeen RGHP; Division of Cell Biology, Oncode Institute, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., van den Broek B; BioImaging Facility, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., Mhaskar AN; Division of Gene Regulation, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., Teunissen H; Division of Gene Regulation, Oncode Institute, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., St Hilaire BG; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Weisz D; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Omer AD; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA., Pham M; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA., Colaric Z; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA., Yang Z; Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech, Pudong 201210, China., Rao SSP; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA., Mitra N; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Lui C; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA., Yao W; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA., Khan R; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Moroz LL; Whitney Laboratory and Department of Neuroscience, University of Florida, Gainesville, FL 32611, USA., Kohn A; Whitney Laboratory and Department of Neuroscience, University of Florida, Gainesville, FL 32611, USA., St Leger J; Department of Biosciences, Cornell University College of Veterinary Medicine, Ithaca, NY 14853, USA., Mena A; SeaWorld San Diego, San Diego, CA 92109, USA., Holcroft K; Moody Gardens, Galveston, TX 77554, USA., Gambetta MC; Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland., Lim F; Department of Medicine and Molecular Biology, University of California, San Diego, La Jolla, CA 92093, USA., Farley E; Department of Medicine and Molecular Biology, University of California, San Diego, La Jolla, CA 92093, USA., Stein N; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK Gatersleben), 06466 Seeland, Germany.; Center of Integrated Breeding Research (CiBreed), Department of Crop Sciences, Georg-August-University Göttingen, 37075 Göttingen, Germany.; UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA 6009, Australia., Haddad A; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA., Chauss D; National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA., Mutlu AS; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Wang MC; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.; Huffington Center on Aging, Baylor College of Medicine, Houston, TX 77030, USA.; Howard Hughes Medical Institute, Baylor College of Medicine, Houston, TX 77030, USA., Young ND; Faculty of Veterinary and Agricultural Sciences, University of Melbourne, Parkville, VIC 3010, Australia., Hildebrandt E; Avian Diseases and Oncology Laboratory, US Department of Agriculture, Agricultural Research Service, East Lansing, MI 48823, USA., Cheng HH; Avian Diseases and Oncology Laboratory, US Department of Agriculture, Agricultural Research Service, East Lansing, MI 48823, USA., Knight CJ; Hopkins Marine Station, Stanford University, Pacific Grove, CA 93950, USA., Burnham TLU; Department of Wildlife, Fish, and Conservation Biology, University of California, Davis, Davis, CA 95616, USA.; Coastal and Marine Institute and Department of Biology, San Diego State University, San Diego, CA 92106, USA., Hovel KA; Coastal and Marine Institute and Department of Biology, San Diego State University, San Diego, CA 92106, USA., Beel AJ; Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA., Mattei PJ; Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA., Kornberg RD; Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA., Warren WC; Department of Animal Sciences, University of Missouri, Columbia, MO 65211, USA., Cary G; The Jackson Laboratory, Bar Harbor, ME 04609, USA., Gómez-Skarmeta JL; Centro Andaluz de Biología del Desarrollo CSIC, Universidad Pablo de Olavide, 41013 Sevilla, Spain., Hinman V; Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Lindblad-Toh K; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, 751 23 Uppsala, Sweden., Di Palma F; Department of Biological Sciences, University of East Anglia, Norwich NR4 7TJ, UK., Maeshima K; Genome Dynamics Laboratory, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.; Department of Genetics, Sokendai (Graduate University for Advanced Studies), Mishima, Shizuoka 411-8540, Japan., Multani AS; Department of Genetics, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA., Pathak S; Department of Genetics, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA., Nel-Themaat L; Department of Genetics, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA., Behringer RR; Department of Genetics, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA., Kaur P; UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA 6009, Australia., Medema RH; Division of Cell Biology, Oncode Institute, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., van Steensel B; Division of Gene Regulation, Oncode Institute, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., de Wit E; Division of Gene Regulation, Oncode Institute, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., Onuchic JN; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; Departments of Physics and Astronomy, Chemistry, and Biosciences, Rice University, Houston, TX 77005, USA., Di Pierro M; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; Department of Physics, Northeastern University, Boston, MA 02115, USA., Lieberman Aiden E; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA. b.rowland@nki.nl erez@erez.com.; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech, Pudong 201210, China.; UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA 6009, Australia.; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA., Rowland BD; Division of Gene Regulation, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands. b.rowland@nki.nl erez@erez.com.

Publikováno v: Science (New York, N.Y.) [Science] 2021 May 28; Vol. 372 (6545), pp. 984-989.

The amyloid precursor protein has a flexible transmembrane domain and binds cholesterol.

Autor: Barrett PJ; Department of Biochemistry, Center for Structural Biology and Institute of Chemical Biology, Vanderbilt University School of Medicine, Nashville, TN 37232 USA., Song Y, Van Horn WD, Hustedt EJ, Schafer JM, Hadziselimovic A, Beel AJ, Sanders CR

Publikováno v: Science (New York, N.Y.) [Science] 2012 Jun 01; Vol. 336 (6085), pp. 1168-71.

The impact of window functions on NMR-based paramagnetic relaxation enhancement measurements in membrane proteins.

Autor: Van Horn WD; Department of Biochemistry and Center for Structural Biology, Vanderbilt University School of Medicine, Nashville, TN 37232-8725, USA., Beel AJ, Kang C, Sanders CR

Publikováno v: Biochimica et biophysica acta [Biochim Biophys Acta] 2010 Feb; Vol. 1798 (2), pp. 140-9. Date of Electronic Publication: 2009 Sep 12.

Structural studies of the transmembrane C-terminal domain of the amyloid precursor protein (APP): does APP function as a cholesterol sensor?

Autor: Beel AJ; Department of Biochemistry and Center for Structural Biology, Vanderbilt University, Nashville, Tennessee 37232-8725, USA., Mobley CK, Kim HJ, Tian F, Hadziselimovic A, Jap B, Prestegard JH, Sanders CR

Publikováno v: Biochemistry [Biochemistry] 2008 Sep 09; Vol. 47 (36), pp. 9428-46. Date of Electronic Publication: 2008 Aug 15.