BioSimulators: a central registry of simulation engines and services for recommending specific tools

Autor: Shaikh, Bilal, Smith, Lucian P., Vasilescu, Dan, Marupilla, Gnaneswara, Wilson, Michael, Agmon, Eran, Agnew, Henry, Andrews, Steven S., Anwar, Azraf, Beber, Moritz E., Bergmann, Frank T., Brooks, David, Brusch, Lutz, Calzone, Laurence, Choi, Kiri, Cooper, Joshua, Detloff, John, Drawert, Brian, Dumontier, Michel, Ermentrout, G. Bard, Faeder, James R., Freiburger, Andrew P., Fröhlich, Fabian, Funahashi, Akira, Garny, Alan, Gennari, John H., Gleeson, Padraig, Goelzer, Anne, Haiman, Zachary, Hellerstein, Joseph L., Hoops, Stefan, Ison, Jon C., Jahn, Diego, Jakubowski, Henry V., Jordan, Ryann, Kalaš, Matúš, König, Matthias, Liebermeister, Wolfram, Mandal, Synchon, McDougal, Robert, Medley, J. Kyle, Mendes, Pedro, Müller, Robert, Myers, Chris J., Naldi, Aurelien, Nguyen, Tung V. N., Nickerson, David P., Olivier, Brett G., Patoliya, Drashti, Paulevé, Loïc, Petzold, Linda R., Priya, Ankita, Rampadarath, Anand K., Rohwer, Johann M., Saglam, Ali S., Singh, Dilawar, Sinha, Ankur, Snoep, Jacky, Sorby, Hugh, Spangler, Ryan, Starruß, Jörn, Thomas, Payton J., van Niekerk, David, Weindl, Daniel, Zhang, Fengkai, Zhukova, Anna, Goldberg, Arthur P., Blinov, Michael L., Sauro, Herbert M., Moraru, Ion I., Karr, Jonathan R.

Computational models have great potential to accelerate bioscience, bioengineering, and medicine. However, it remains challenging to reproduce and reuse simulations, in part, because the numerous formats and methods for simulating various subsystems

Externí odkaz: http://arxiv.org/abs/2203.06732

Network heterogeneity and node capacity lead to heterogeneous scaling of fluctuations in random walks on graphs

Autor: Kosmidis, Kosmas, Beber, Moritz, Hütt, Marc-Thorsten

Publikováno v: Advances in Complex Systems, 1550007, 2015

Random walks are one of the best investigated dynamical processes on graphs. A particularly fascinating phenomenon is the scaling relationship of fluctuations $\sigma $ with the average flux $\langle f \rangle $. Here we analyze how network topology

Externí odkaz: http://arxiv.org/abs/1505.07282

The impact of network connectivity on performance in production logistic networks

Autor: Becker, Till, Beber, Moritz Emanuel, Windt, Katja, Hütt, Marc-Thorsten

Publikováno v: In CIRP Journal of Manufacturing Science and Technology 2012 5(4):309-318

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Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism (Nature Communications, (2019), 10, 1, (3586), 10.1038/s41467-019-11581-3)

Autor: Lu, Hongzhong, Li, Feiran, Sánchez, Benjamín José, Zhu, Zhengming, Li, Gang, Domenzain, Iván, Marcišauskas, Simonas, Anton, Petre Mihail, Lappa, Dimitra, Lieven, Christian, Beber, Moritz Emanuel, Sonnenschein, Nikolaus, Kerkhoven, Eduard J., Nielsen, Jens

Publikováno v: Lu, H, Li, F, Sánchez, B J, Zhu, Z, Li, G, Domenzain, I, Marcišauskas, S, Anton, P M, Lappa, D, Lieven, C, Beber, M E, Sonnenschein, N, Kerkhoven, E J & Nielsen, J 2020, ' Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism (Nature Communications, (2019), 10, 1, (3586), 10.1038/s41467-019-11581-3) ', Nature Communications, vol. 11, no. 1, 5443 . https://doi.org/10.1038/s41467-020-19358-9

In the original version of this Article, the calculation of the WAP score in the second paragraph of the “Methods” subsection “CLUMPS method to calculate p values of mutation-enriched PDB files” was incorrectly written as “Next, assuming th

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______1202::9a2d90bce699f1cd89468c897f385d49
https://orbit.dtu.dk/en/publications/8d49afca-2c7b-4044-938a-6e27ee81e98e