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Discovery of recessive effect of human polymerase δ proofreading deficiency through mutational analysis of POLD1-mutated normal and cancer cells.

Autor: Andrianova MA; Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain., Seplyarskiy VB; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.; Division of Genetics, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA., Terradas M; Hereditary Cancer Program, Catalan Institute of Oncology, Oncobell Program, IDIBELL, Hospitalet de Llobregat, Barcelona, Spain., Sánchez-Heras AB; Foundation for the Promotion of Health and Biomedical Research of Valencia Region (FISABIO), Elche Health Department, Elche, Spain.; Medical Oncology Department, Cancer Genetic Counseling Unit. Elche University Hospital, Elche, Spain., Mur P; Hereditary Cancer Program, Catalan Institute of Oncology, Oncobell Program, IDIBELL, Hospitalet de Llobregat, Barcelona, Spain.; Department of Health of Catalonia, Catalan Cancer Plan, Barcelona, Spain., Soto JL; Foundation for the Promotion of Health and Biomedical Research of Valencia Region (FISABIO), Elche Health Department, Elche, Spain.; Molecular Genetics Unit, Elche University Hospital, Elche, Spain., Aiza G; Hereditary Cancer Program, Catalan Institute of Oncology, Oncobell Program, IDIBELL, Hospitalet de Llobregat, Barcelona, Spain., Borràs E; Molecular Genetics Unit, Consorci Sanitari de Terrassa, Terrassa, Spain., Kondrashov FA; Institute of Science and Technology Austria, Klosterneuburg, Austria.; Evolutionary and Synthetic Biology Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan., Kondrashov AS; Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA., Bazykin GA; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.; Division of Genetics, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA., Valle L; Hereditary Cancer Program, Catalan Institute of Oncology, Oncobell Program, IDIBELL, Hospitalet de Llobregat, Barcelona, Spain. lvalle@idibell.cat.; Centro de Investigación Biomédica en Red de Cáncer (CIBERONC), Madrid, Spain. lvalle@idibell.cat.

Publikováno v: European journal of human genetics : EJHG [Eur J Hum Genet] 2024 Jul; Vol. 32 (7), pp. 837-845. Date of Electronic Publication: 2024 Apr 24.

Mutational Signatures in Wild Type Escherichia coli Strains Reveal Predominance of DNA Polymerase Errors.

Autor: Garushyants SK; A.A. Kharkevich Institute for Information Transmission Problems, RAS, Moscow, Russia., Sane M; National Centre for Biological Sciences, Bengaluru, India., Selifanova MV; Faculty of Bioengineering and Bioinformatics, M.V. Lomonosov Moscow State University, Moscow, Russia., Agashe D; National Centre for Biological Sciences, Bengaluru, India., Bazykin GA; A.A. Kharkevich Institute for Information Transmission Problems, RAS, Moscow, Russia., Gelfand MS; A.A. Kharkevich Institute for Information Transmission Problems, RAS, Moscow, Russia.; Center for Molecular and Cellular Biology, Skolkovo Institute of Science and Technology (Skoltech), Moscow, Russia.

Publikováno v: Genome biology and evolution [Genome Biol Evol] 2024 Apr 02; Vol. 16 (4).

An Early SARS-CoV-2 Omicron Outbreak in a Dormitory in Saint Petersburg, Russia.

Autor: Klink GV; A.A. Kharkevich Institute for Information Transmission Problems of the Russian Academy of Sciences, 127051 Moscow, Russia., Danilenko D; Smorodintsev Research Institute of Influenza, 197376 Saint-Petersburg, Russia., Komissarov AB; Smorodintsev Research Institute of Influenza, 197376 Saint-Petersburg, Russia., Yolshin N; Smorodintsev Research Institute of Influenza, 197376 Saint-Petersburg, Russia., Shneider O; Smorodintsev Research Institute of Influenza, 197376 Saint-Petersburg, Russia.; City Hospital #40, 197706 Saint-Petersburg, Russia., Shcherbak S; City Hospital #40, 197706 Saint-Petersburg, Russia., Nabieva E; A.A. Kharkevich Institute for Information Transmission Problems of the Russian Academy of Sciences, 127051 Moscow, Russia., Shvyrev N; International Laboratory of Statistical and Computational Genomics, HSE University, 101000 Moscow, Russia., Konovalova N; Smorodintsev Research Institute of Influenza, 197376 Saint-Petersburg, Russia., Zheltukhina A; Smorodintsev Research Institute of Influenza, 197376 Saint-Petersburg, Russia., Fadeev A; Smorodintsev Research Institute of Influenza, 197376 Saint-Petersburg, Russia., Komissarova K; Smorodintsev Research Institute of Influenza, 197376 Saint-Petersburg, Russia., Ksenafontov A; Smorodintsev Research Institute of Influenza, 197376 Saint-Petersburg, Russia., Musaeva T; Smorodintsev Research Institute of Influenza, 197376 Saint-Petersburg, Russia., Eder V; Smorodintsev Research Institute of Influenza, 197376 Saint-Petersburg, Russia., Pisareva M; Smorodintsev Research Institute of Influenza, 197376 Saint-Petersburg, Russia., Nekrasov P; Smorodintsev Research Institute of Influenza, 197376 Saint-Petersburg, Russia., Shchur V; International Laboratory of Statistical and Computational Genomics, HSE University, 101000 Moscow, Russia., Bazykin GA; A.A. Kharkevich Institute for Information Transmission Problems of the Russian Academy of Sciences, 127051 Moscow, Russia.; Skolkovo Institute of Science and Technology (Skoltech), 121205 Moscow, Russia., Lioznov D; Smorodintsev Research Institute of Influenza, 197376 Saint-Petersburg, Russia.; First Pavlov State Medical University, 197022 Saint-Petersburg, Russia.

Publikováno v: Viruses [Viruses] 2023 Jun 22; Vol. 15 (7). Date of Electronic Publication: 2023 Jun 22.

Secondary structure of the human mitochondrial genome affects formation of deletions.

Autor: Shamanskiy V; Center for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russia., Mikhailova AA; Center for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russia., Tretiakov EO; Department of Molecular Neurosciences, Center for Brain Research, Medical University of Vienna, Vienna, Austria., Ushakova K; Center for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russia., Mikhailova AG; Center for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russia.; Vavilov Institute of General Genetics RAS, Moscow, Russia., Oreshkov S; Center for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russia., Knorre DA; Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russian Federation., Ree N; Center for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russia., Overdevest JB; Department of Otolaryngology, Columbia University Irving Medical Center, New York, USA., Lukowski SW; Institute for Molecular Bioscience, University of Queensland, St Lucia, Brisbane, Australia., Gostimskaya I; Manchester Institute of Biotechnology, The University of Manchester, Manchester, UK.; Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, UK., Yurov V; Center for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russia., Liou CW; Department of Neurology, Kaohsiung Chang-Gung Memorial Hospital and Chang-Gung University, Kaohsiung, Taiwan., Lin TK; Department of Neurology, Kaohsiung Chang-Gung Memorial Hospital and Chang-Gung University, Kaohsiung, Taiwan., Kunz WS; Division of Neurochemistry, Department of Experimental Epileptology and Cognition Research, University Bonn, Bonn, Germany.; Department of Epileptology, University Hospital of Bonn, Bonn, Germany., Reymond A; Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Mazunin I; Center for Molecular and Cellular Biology, Skolkovo Institute of Science and Technology, Moscow, Russia., Bazykin GA; Center for Molecular and Cellular Biology, Skolkovo Institute of Science and Technology, Moscow, Russia.; Laboratory of Molecular Evolution, Institute for Information Transmission Problems (Kharkevich Institute) of the Russian Academy of Sciences, Moscow, Russia., Fellay J; Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland., Tanaka M; Department for Health and Longevity Research, National Institutes of Biomedical Innovation, Health and Nutrition, 1-23-1 Toyama, Shinjuku-Ku, Tokyo, 162-8636, Japan.; Department of Neurology, Juntendo University Graduate School of Medicine, 2-1-1 Hongo, Bunkyo-Ku, Tokyo, 113-8421, Japan.; Department of Clinical Laboratory, IMS Miyoshi General Hospital, Fujikubo, Miyoshi-Machi, Iruma, Saitama Prefecture, 974-3354-0041, Japan., Khrapko K; Northeastern University, Boston, MA, USA., Gunbin K; Center for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russia.; Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia., Popadin K; Center for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russia. konstantin.popadin@epfl.ch.; Swiss Institute of Bioinformatics, Lausanne, Switzerland. konstantin.popadin@epfl.ch.; Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland. konstantin.popadin@epfl.ch.

Publikováno v: BMC biology [BMC Biol] 2023 May 08; Vol. 21 (1), pp. 103. Date of Electronic Publication: 2023 May 08.