NeuroGraph: Benchmarks for Graph Machine Learning in Brain Connectomics.

Autor: Said A; Vanderbilt University., Bayrak RG; Vanderbilt University., Derr T; Vanderbilt University., Shabbir M; Vanderbilt University.; Information Technology University., Moyer D; Vanderbilt University., Chang C; Vanderbilt University., Koutsoukos X; Vanderbilt University.

Publikováno v: ArXiv [ArXiv] 2024 Nov 22. Date of Electronic Publication: 2024 Nov 22.

Multimodal state-dependent connectivity analysis of arousal and autonomic centers in the brainstem and basal forebrain.

Autor: Pourmotabbed H; Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, USA.; Vanderbilt University Institute of Imaging Science, Vanderbilt University Medical Center, Nashville, TN, USA.; Vanderbilt Institute for Surgery and Engineering, Vanderbilt University, Nashville, TN, USA., Martin CG; Vanderbilt University Institute of Imaging Science, Vanderbilt University Medical Center, Nashville, TN, USA.; Vanderbilt Institute for Surgery and Engineering, Vanderbilt University, Nashville, TN, USA.; Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, TN, USA., Goodale SE; Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, USA.; Vanderbilt University Institute of Imaging Science, Vanderbilt University Medical Center, Nashville, TN, USA.; Vanderbilt Institute for Surgery and Engineering, Vanderbilt University, Nashville, TN, USA., Doss DJ; Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, USA.; Vanderbilt University Institute of Imaging Science, Vanderbilt University Medical Center, Nashville, TN, USA.; Vanderbilt Institute for Surgery and Engineering, Vanderbilt University, Nashville, TN, USA., Wang S; Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, USA.; Vanderbilt University Institute of Imaging Science, Vanderbilt University Medical Center, Nashville, TN, USA.; Vanderbilt Institute for Surgery and Engineering, Vanderbilt University, Nashville, TN, USA., Bayrak RG; Vanderbilt University Institute of Imaging Science, Vanderbilt University Medical Center, Nashville, TN, USA.; Vanderbilt Institute for Surgery and Engineering, Vanderbilt University, Nashville, TN, USA.; Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, TN, USA., Kang H; Department of Biostatistics, Vanderbilt University, Nashville, TN, USA., Morgan VL; Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, USA.; Vanderbilt University Institute of Imaging Science, Vanderbilt University Medical Center, Nashville, TN, USA.; Vanderbilt Institute for Surgery and Engineering, Vanderbilt University, Nashville, TN, USA.; Department of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, TN, USA.; Department of Neurological Surgery, Vanderbilt University Medical Center, Nashville, TN, USA., Englot DJ; Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, USA.; Vanderbilt University Institute of Imaging Science, Vanderbilt University Medical Center, Nashville, TN, USA.; Vanderbilt Institute for Surgery and Engineering, Vanderbilt University, Nashville, TN, USA.; Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, TN, USA.; Department of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, TN, USA.; Department of Neurological Surgery, Vanderbilt University Medical Center, Nashville, TN, USA., Chang C; Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, USA.; Vanderbilt University Institute of Imaging Science, Vanderbilt University Medical Center, Nashville, TN, USA.; Vanderbilt Institute for Surgery and Engineering, Vanderbilt University, Nashville, TN, USA.; Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, TN, USA.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2024 Nov 13. Date of Electronic Publication: 2024 Nov 13.

Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset?

Autor: Schilling KG; Department of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, TN, United States. Electronic address: kurt.g.schilling.1@vumc.org., Rheault F; SCIL, Université de Sherbrooke, Québec, Canada., Petit L; Groupe dImagerie Neurofonctionnelle, Institut Des Maladies Neurodegeneratives, CNRS, CEA University of Bordeaux, Bordeaux, France., Hansen CB; Department of Electrical Engineering and Computer Science, Vanderbilt University, Nashville, TN, United States., Nath V; Department of Electrical Engineering and Computer Science, Vanderbilt University, Nashville, TN, United States., Yeh FC; Department of Neurological Surgery, University of Pittsburgh, Pittsburgh, PA, United States., Girard G; CIBM Center for BioMedical Imaging, Lausanne, Switzerland., Barakovic M; Translational Imaging in Neurology (ThINK), Department of Medicine and Biomedical Engineering, University Hospital and University of Basel, Basel, Switzerland., Rafael-Patino J; Signal Processing Lab (LTS5), École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland., Yu T; Signal Processing Lab (LTS5), École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland., Fischi-Gomez E; Signal Processing Lab (LTS5), École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland., Pizzolato M; Department of Applied Mathematics and Computer Science, Technical University of Denmark, Kongens Lyngby, Denmark., Ocampo-Pineda M; Department of Computer Science, University of Verona, Italy., Schiavi S; Department of Computer Science, University of Verona, Italy., Canales-Rodríguez EJ; Signal Processing Lab (LTS5), École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland., Daducci A; Department of Computer Science, University of Verona, Italy., Granziera C; Translational Imaging in Neurology (ThINK), Department of Medicine and Biomedical Engineering, University Hospital and University of Basel, Basel, Switzerland., Innocenti G; Department of Neuroscience, Karolinska Institutet, Stockholm, Sweden., Thiran JP; Signal Processing Lab (LTS5), École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland., Mancini L; Lysholm Department of Neuroradiology, National Hospital for Neurology & Neurosurgery, UCL Hospitals NHS Foundation Trust, London, United Kingdom., Wastling S; Lysholm Department of Neuroradiology, National Hospital for Neurology & Neurosurgery, UCL Hospitals NHS Foundation Trust, London, United Kingdom., Cocozza S; Department of Advanced Biomedical Sciences, University 'Federico II', Naples, Italy., Petracca M; Department of Neurosciences and Reproductive and Odontostomatological Sciences, University 'Federico II', Naples, Italy., Pontillo G; Department of Advanced Biomedical Sciences, University 'Federico II', Naples, Italy., Mancini M; Department of Neuroscience, Brighton and Sussex Medical School, University of Sussex, Brighton, United Kingdom., Vos SB; Centre for Medical Image Computing, University College London, London, United Kingdom., Vakharia VN; Department of Clinical and Experimental Epilepsy, University College London, London, United Kingdom., Duncan JS; Epilepsy Society MRI Unit, Chalfont St Peter, United Kingdom., Melero H; Departamento de Psicobiología y Metodología en Ciencias del Comportamiento - Universidad Complutense de Madrid, Spain Laboratorio de Análisis de Imagen Médica y Biometría (LAIMBIO), Universidad Rey Juan Carlos, Madrid, Spain., Manzanedo L; Facultad de Ciencias de la Salud, Universidad Rey Juan Carlos, Madrid, Spain., Sanz-Morales E; Laboratorio de Análisis de Imagen Médica y Biometría (LAIMBIO), Universidad Rey Juan Carlos, Madrid, Spain., Peña-Melián Á; Departamento de Anatomía, Facultad de Medicina, Universidad Complutense de Madrid, Madrid, Spain., Calamante F; Sydney Imaging and School of Biomedical Engineering, The University of Sydney, Sydney, Australia., Attyé A; School of Biomedical Engineering, The University of Sydney, Sydney, Australia., Cabeen RP; Laboratory of Neuro Imaging, Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, Los Angeles, CA, United States., Korobova L; Center for Integrative Connectomics, Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, Los Angeles, CA, United States., Toga AW; Laboratory of Neuro Imaging, Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, Los Angeles, CA, United States., Vijayakumari AA; Department of Radiology, University of Pennsylvania, Philadelphia, PA, United States., Parker D; Department of Radiology, University of Pennsylvania, Philadelphia, PA, United States., Verma R; Department of Radiology, University of Pennsylvania, Philadelphia, PA, United States., Radwan A; KU Leuven, Department of Imaging and Pathology, Translational MRI, B-3000, Leuven, Belgium., Sunaert S; KU Leuven, Department of Imaging and Pathology, Translational MRI, B-3000, Leuven, Belgium., Emsell L; KU Leuven, Department of Imaging and Pathology, Translational MRI, B-3000, Leuven, Belgium., De Luca A; PROVIDI Lab, UMC Utrecht, The Netherlands., Leemans A; PROVIDI Lab, UMC Utrecht, The Netherlands., Bajada CJ; Department of Physiology and Biochemistry, Faculty of Medicine and Surgery, University of Malta, Malta., Haroon H; Division of Neuroscience & Experimental Psychology, Faculty of Biology, Medicine and Health, The University of Manchester, Manchester Academic Health Science Centre, Manchester, United Kingdom., Azadbakht H; AINOSTICS Limited, London, United Kingdom., Chamberland M; Cardiff University Brain Research Imaging Centre (CUBRIC), Cardiff University, Cardiff, United Kingdom., Genc S; Cardiff University Brain Research Imaging Centre (CUBRIC), Cardiff University, Cardiff, United Kingdom., Tax CMW; Cardiff University Brain Research Imaging Centre (CUBRIC), Cardiff University, Cardiff, United Kingdom., Yeh PH; National Intrepid Center of Excellence, Walter Reed National Military Medical Center, Bethesda, MD, USA., Srikanchana R; National Intrepid Center of Excellence, Walter Reed National Military Medical Center, Bethesda, MD, USA., Mcknight CD; Department of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, TN, United States., Yang JY; Department of Neurosurgery, Neuroscience Advanced Clinical Imaging Suite (NACIS), Royal Children's Hospital, Parkville, Melbourne, Australia., Chen J; Developmental Imaging, Murdoch Children's Research Institute, Melbourne, Australia., Kelly CE; Victorian Infant Brain Studies, Murdoch Children's Research Institute, Melbourne, Australia., Yeh CH; Institute for Radiological Research, Chang Gung University & Chang Gung Memorial Hospital, Taoyuan, Taiwan., Cochereau J; Poitiers University Hospital, France., Maller JJ; MRI Clinical Science Specialist, General Electric Healthcare, Australia., Welton T; National Neuroscience Institute, Singapore., Almairac F; Neurosurgery department, Hôpital Pasteur, University Hospital of Nice, Côte d'Azur University, France., Seunarine KK; Developmental Imaging and Biophysics Section, UCL GOS Institute of Child Health, London., Clark CA; Developmental Imaging and Biophysics Section, UCL GOS Institute of Child Health, London., Zhang F; Brigham & Women's Hospital and Harvard Medical School, Boston, Massachusetts, USA., Makris N; Brigham & Women's Hospital and Harvard Medical School, Boston, Massachusetts, USA., Golby A; Brigham & Women's Hospital and Harvard Medical School, Boston, Massachusetts, USA., Rathi Y; Brigham & Women's Hospital and Harvard Medical School, Boston, Massachusetts, USA., O'Donnell LJ; Brigham & Women's Hospital and Harvard Medical School, Boston, Massachusetts, USA., Xia Y; University of Southern California, Keck School of Medicine, Neuroimaging and Informatics Institute, Los Angeles, California, United States., Aydogan DB; Department of Neuroscience and Biomedical Engineering, Aalto University School of Science, Espoo, Finland., Shi Y; University of Southern California, Keck School of Medicine, Neuroimaging and Informatics Institute, Los Angeles, California, United States., Fernandes FG; UMC Utrecht Brain Center, Department of Neurology&Neurosurgery, Utrecht, the Netherlands., Raemaekers M; UMC Utrecht Brain Center, Department of Neurology&Neurosurgery, Utrecht, the Netherlands., Warrington S; Sir Peter Mansfield Imaging Centre, School of Medicine, University of Nottingham, UK., Michielse S; Department of Neurosurgery, School for Mental Health and Neuroscience, Maastricht University., Ramírez-Manzanares A; Centro de Investigación en Matemáticas A.C. (CIMAT), Guanajuato, Mexico., Concha L; Universidad Nacional Autonoma de Mexico, Institute of Neurobiology, Mexico City, Mexico., Aranda R; Centro de Investigación Científica y de Educación Superior de Ensenada (CICESE-UT3), Cátedras-CONACyT, Ensenada, Mexico., Meraz MR; Centro de Investigación en Matemáticas A.C. (CIMAT), Guanajuato, Mexico., Lerma-Usabiaga G; Department of Psychology, Stanford University, Stanford, California, USA., Roitman L; Department of Psychology, Stanford University, Stanford, California, USA., Fekonja LS; Department of Neurosurgery, Charité - Universitätsmedizin Berlin, Berlin, Germany., Calarco N; Kimel Family Translational Imaging-Genetics Laboratory, Research Imaging Centre, Centre for Addiction and Mental Health, Toronto, Ontario., Joseph M; Kimel Family Translational Imaging-Genetics Laboratory, Research Imaging Centre, Centre for Addiction and Mental Health, Toronto, Ontario., Nakua H; Kimel Family Translational Imaging-Genetics Laboratory, Research Imaging Centre, Centre for Addiction and Mental Health, Toronto, Ontario., Voineskos AN; Kimel Family Translational Imaging-Genetics Laboratory, Research Imaging Centre, Centre for Addiction and Mental Health, Toronto, Ontario., Karan P; SCIL, Université de Sherbrooke, Québec, Canada., Grenier G; SCIL, Université de Sherbrooke, Québec, Canada., Legarreta JH; SCIL, Université de Sherbrooke, Québec, Canada., Adluru N; University of Wisconsin-Madison, Madison, WI, USA., Nair VA; University of Wisconsin-Madison, Madison, WI, USA., Prabhakaran V; University of Wisconsin-Madison, Madison, WI, USA., Alexander AL; University of Wisconsin-Madison, Madison, WI, USA., Kamagata K; Department of Radiology, Juntendo University Graduate School of Medicine, Tokyo Japan., Saito Y; Department of Radiology, Juntendo University Graduate School of Medicine, Tokyo Japan., Uchida W; Department of Radiology, Juntendo University Graduate School of Medicine, Tokyo Japan., Andica C; Department of Radiology, Juntendo University Graduate School of Medicine, Tokyo Japan., Abe M; Department of Radiology, Juntendo University Graduate School of Medicine, Tokyo Japan., Bayrak RG; Department of Electrical Engineering and Computer Science, Vanderbilt University, Nashville, TN, United States., Wheeler-Kingshott CAMG; NMR Research Unit, Queen Square MS Centre, Department of Neuroinflammation, UCL Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, London, United Kingdom., D'Angelo E; Department of Brain and Behavioral Sciences, University of Pavia, Italy., Palesi F; Department of Brain and Behavioral Sciences, University of Pavia, Italy., Savini G; Brain MRI 3T Research Center, IRCCS Mondino Foundation, Pavia, Italy., Rolandi N; Department of Brain and Behavioral Sciences, University of Pavia, Italy., Guevara P; Universidad de Concepción, Faculty of Engineering, Concepción, Chile., Houenou J; Université Paris-Saclay, CEA, CNRS, Neurospin, Gif-sur-Yvette, France., López-López N; Universidad de Concepción, Faculty of Engineering, Concepción, Chile., Mangin JF; Université Paris-Saclay, CEA, CNRS, Neurospin, Gif-sur-Yvette, France., Poupon C; Université Paris-Saclay, CEA, CNRS, Neurospin, Gif-sur-Yvette, France., Román C; Universidad de Concepción, Faculty of Engineering, Concepción, Chile., Vázquez A; Universidad de Concepción, Faculty of Engineering, Concepción, Chile., Maffei C; Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, USA., Arantes M; Department of Biomedicine, Unit of Anatomy, Faculty of Medicine of the University of Porto, Al. Professor Hernâni Monteiro, Porto, Portugal., Andrade JP; Department of Biomedicine, Unit of Anatomy, Faculty of Medicine of the University of Porto, Al. Professor Hernâni Monteiro, Porto, Portugal., Silva SM; Department of Biomedicine, Unit of Anatomy, Faculty of Medicine of the University of Porto, Al. Professor Hernâni Monteiro, Porto, Portugal., Calhoun VD; Tri-institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, GA 30303, United States., Caverzasi E; Neurology Department UCSF Weill Institute for Neurosciences, University of California, San Francisco., Sacco S; Neurology Department UCSF Weill Institute for Neurosciences, University of California, San Francisco., Lauricella M; Memory and Aging Center. UCSF Weill Institute for Neurosciences, University of California, San Francisco, USA., Pestilli F; Department of Psychology, The University of Texas at Austin, TX 78731, USA., Bullock D; Department of Psychology, The University of Texas at Austin, TX 78731, USA., Zhan Y; Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China., Brignoni-Perez E; Developmental-Behavioral Pediatrics Division, Department of Pediatrics, Stanford School of Medicine, Stanford, CA, United States., Lebel C; Department of Radiology, University of Calgary, 2500 University Drive NW, Calgary, AB, Canada, T2N 1N4., Reynolds JE; Department of Radiology, University of Calgary, 2500 University Drive NW, Calgary, AB, Canada, T2N 1N4., Nestrasil I; Division of Clinical Behavioral Neuroscience, Department of Pediatrics, University of Minnesota, Minneapolis, MN, USA., Labounek R; Division of Clinical Behavioral Neuroscience, Department of Pediatrics, University of Minnesota, Minneapolis, MN, USA., Lenglet C; Center for Magnetic Resonance Research, Department of Radiology, University of Minnesota, Minneapolis, MN, USA., Paulson A; Division of Clinical Behavioral Neuroscience, Department of Pediatrics, University of Minnesota, Minneapolis, MN, USA., Aulicka S; Department of Paediatric Neurology, University Hospital and Medicine Faculty, Masaryk University, Brno, Czech Republic., Heilbronner SR; Department of Neuroscience, University of Minnesota, Minneapolis, MN, USA., Heuer K; Center for Research and Interdisciplinarity (CRI), INSERM U1284, Université de Paris, Paris, France., Chandio BQ; Department of Intelligent Systems Engineering, Indiana University, Bloomington, IN, USA., Guaje J; Department of Intelligent Systems Engineering, Indiana University, Bloomington, IN, USA., Tang W; Department of Computer Science, Indiana University, Bloomington, IN, USA., Garyfallidis E; Department of Intelligent Systems Engineering, Indiana University, Bloomington, IN, USA., Raja R; University of Arkansas for Medical Sciences, Little Rock, AR, USA., Anderson AW; Department of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, TN, USA., Landman BA; Department of Electrical Engineering and Computer Science, Vanderbilt University, Nashville, TN, United States., Descoteaux M; SCIL, Université de Sherbrooke, Québec, Canada.

Publikováno v: NeuroImage [Neuroimage] 2021 Nov; Vol. 243, pp. 118502. Date of Electronic Publication: 2021 Aug 22.

Characterization and correlation of signal drift in diffusion weighted MRI.

Autor: Hansen CB; Computer Science, Vanderbilt University, Nashville, TN, USA. Electronic address: colin.b.hansen@vanderbilt.edu., Nath V; Computer Science, Vanderbilt University, Nashville, TN, USA., Hainline AE; Biostatistics, Vanderbilt University, Nashville, TN, USA., Schilling KG; Department of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, TN, USA., Parvathaneni P; Electrical Engineering, Vanderbilt University, Nashville, TN, USA., Bayrak RG; Computer Science, Vanderbilt University, Nashville, TN, USA., Blaber JA; Electrical Engineering, Vanderbilt University, Nashville, TN, USA., Irfanoglu O; National Institute of Biomedical Imaging and Bioengineering, Bethesda, MD, USA., Pierpaoli C; National Institute of Biomedical Imaging and Bioengineering, Bethesda, MD, USA., Anderson AW; Department of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, TN, USA; Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, USA., Rogers BP; Department of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, TN, USA; Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, USA., Landman BA; Computer Science, Vanderbilt University, Nashville, TN, USA; Department of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, TN, USA; Electrical Engineering, Vanderbilt University, Nashville, TN, USA; Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, USA.

Publikováno v: Magnetic resonance imaging [Magn Reson Imaging] 2019 Apr; Vol. 57, pp. 133-142. Date of Electronic Publication: 2018 Nov 22.

Consideration of Cerebrospinal Fluid Intensity Variation in Diffusion Weighted MRI.

Autor: Hansen CB; Computer Science, Vanderbilt University, Nashville, TN, USA., Nath V; Computer Science, Vanderbilt University, Nashville, TN, USA., Hainline AE; Biostatistics, Vanderbilt University, Nashville, TN, USA., Schilling KG; Department of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, TN USA., Parvathaneni P; Electrical Engineering, Vanderbilt University, Nashville, TN, USA., Bayrak RG; Computer Science, Vanderbilt University, Nashville, TN, USA., Blaber JA; Electrical Engineering, Vanderbilt University, Nashville, TN, USA., Williams O; National Institutes of Health, Bethesda, MD., Resnick S; National Institutes of Health, Bethesda, MD., Beason-Held L; National Institutes of Health, Bethesda, MD., Irfanoglu O; National Institute of Biomedical Imaging and Bioengineering, Bethesda MD USA., Pierpaoli C; National Institute of Biomedical Imaging and Bioengineering, Bethesda MD USA., Anderson AW; Department of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, TN USA.; Department of Biomedical Engineering, Vanderbilt University, Nashville, TN USA., Rogers BP; Department of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, TN USA.; Department of Biomedical Engineering, Vanderbilt University, Nashville, TN USA., Landman BA; Computer Science, Vanderbilt University, Nashville, TN, USA.; Department of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, TN USA.; Electrical Engineering, Vanderbilt University, Nashville, TN, USA.; Department of Biomedical Engineering, Vanderbilt University, Nashville, TN USA.

Publikováno v: Proceedings of SPIE--the International Society for Optical Engineering [Proc SPIE Int Soc Opt Eng] 2019 Mar; Vol. 10948.