Split Pool Ligation-based Single-cell Transcriptome sequencing (SPLiT-seq) data processing pipeline comparison

Autor: Lucas Kuijpers, Bastian Hornung, Mirjam C. G. N. van den Hout - van Vroonhoven, Wilfred F. J. van IJcken, Frank Grosveld, Eskeatnaf Mulugeta

Publikováno v: BMC Genomics, Vol 25, Iss 1, Pp 1-15 (2024)

Abstract Background Single-cell sequencing techniques are revolutionizing every field of biology by providing the ability to measure the abundance of biological molecules at a single-cell resolution. Although single-cell sequencing approaches have be

Externí odkaz: https://doaj.org/article/2529024ff6db4061927e54fffe6e9d30

The reductive glycine pathway allows autotrophic growth of Desulfovibrio desulfuricans

Autor: Irene Sánchez-Andrea, Iame Alves Guedes, Bastian Hornung, Sjef Boeren, Christopher E. Lawson, Diana Z. Sousa, Arren Bar-Even, Nico J. Claassens, Alfons J. M. Stams

Publikováno v: Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)

There are several pathways for CO2 fixation in photoautotrophic and chemoautotrophic microorganisms. Here, the authors provide experimental demonstration for the operation of the reductive glycine pathway in a natural microorganism, Desulfovibrio des

Externí odkaz: https://doaj.org/article/8a0424fdbc014650bb5be41ed35c3e56

Genomic and functional analysis of Romboutsia ilealis CRIBT reveals adaptation to the small intestine

Autor: Jacoline Gerritsen, Bastian Hornung, Bernadette Renckens, Sacha A.F.T. van Hijum, Vitor A.P. Martins dos Santos, Ger T. Rijkers, Peter J. Schaap, Willem M. de Vos, Hauke Smidt

Publikováno v: PeerJ, Vol 5, p e3698 (2017)

Background The microbiota in the small intestine relies on their capacity to rapidly import and ferment available carbohydrates to survive in a complex and highly competitive ecosystem. Understanding how these communities function requires elucidatin

Externí odkaz: https://doaj.org/article/2c5530cfec594501a2cad49e46bc53ba

Acetate Degradation at Low pH by the Moderately Acidophilic Sulfate Reducer

Autor: Irene, Sánchez-Andrea, Charlotte M, van der Graaf, Bastian, Hornung, Nicole J, Bale, Monika, Jarzembowska, Diana Z, Sousa, W Irene C, Rijpstra, Jaap S, Sinninghe Damsté, Alfons J M, Stams

Publikováno v: Frontiers in microbiology. 13

In acid drainage environments, biosulfidogenesis by sulfate-reducing bacteria (SRB) attenuates the extreme conditions by enabling the precipitation of metals as their sulfides, and the neutralization of acidity through proton consumption. So far, onl

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::c4de7ee7d1babb574cc91c25398dde65
https://pubmed.ncbi.nlm.nih.gov/35391737

Romboutsia hominis sp. nov., the first human gut-derived representative of the genus Romboutsia, isolated from ileostoma effluent

Autor: Jorrit Gerritsen, Alexander Umanets, Jarmo Ritari, Willem M. de Vos, Bastian Hornung, Lars Paulin, Hauke Smidt, Ivelina Staneva, Ger T. Rijkers

Publikováno v: International Journal of Systematic and Evolutionary Microbiology 68 (2018) 11
International Journal of Systematic and Evolutionary Microbiology, 68(11), 3479-3486

A Gram-stain-positive, motile, rod-shaped, obligately anaerobic bacterium, designated FRIFIT, was isolated from human ileostoma effluent and characterized. On the basis of 16S rRNA gene sequence similarity, strain FRIFIT was most closely related to t

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::276e87fe2fc653b2457033f7658d1a8f
https://doi.org/10.1099/ijsem.0.003012