Zobrazeno 1 - 9
of 9
pro vyhledávání: '"Bastiaan A. van den Berg"'
Insight into neutral and disease-associated human genetic variants through interpretable predictors.
Publikováno v:
PLoS ONE, Vol 10, Iss 3, p e0120729 (2015)
A variety of methods that predict human nonsynonymous single nucleotide polymorphisms (SNPs) to be neutral or disease-associated have been developed over the last decade. These methods are used for pinpointing disease-associated variants in the many
Externí odkaz:
https://doaj.org/article/9e6d2a4b6f6b4e9f93f03bc9a8d21895
Autor:
Bastiaan A van den Berg, Marcel J T Reinders, Marc Hulsman, Liang Wu, Herman J Pel, Johannes A Roubos, Dick de Ridder
Publikováno v:
PLoS ONE, Vol 7, Iss 10, p e45869 (2012)
Protein sequence features are explored in relation to the production of over-expressed extracellular proteins by fungi. Knowledge on features influencing protein production and secretion could be employed to improve enzyme production levels in indust
Externí odkaz:
https://doaj.org/article/7e77c22f95304804bfce54f403bcb041
Publikováno v:
GREDOS. Repositorio Institucional de la Universidad de Salamanca
instname
instname
[EN] This thesis gives an overview in understanding the Late Miocene evolution of Mediterranean-Atlantic gateways in general and new results and insights for the Betic Corridor in particular. Betic Corridor research was done in two ways: • By const
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::61c5af898d8613d66cb8a55680bf27ec
https://doi.org/10.14201/gredos.132993
https://doi.org/10.14201/gredos.132993
hPSC Modeling Reveals that Fate Selection of Cortical Deep Projection Neurons Occurs in the Subplate
Autor:
Tiago Rito, Ali H Brivanlou, Bastiaan L. van den Berg, M. Zeeshan Ozair, Albert Ruzo, Christoph Kirst
Publikováno v:
Cell Stem Cell. 23:60-73.e6
Summary Cortical deep projection neurons (DPNs) are implicated in neurodevelopmental disorders. Although recent findings emphasize post-mitotic programs in projection neuron fate selection, the establishment of primate DPN identity during layer forma
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c4487c9aa9d180a1eee5ed1345316f02
https://doi.org/10.1016/j.stem.2018.05.024
https://doi.org/10.1016/j.stem.2018.05.024
Publikováno v:
PLoS ONE, Vol 10, Iss 3, p e0120729 (2015)
PLoS ONE, 10(3)
PLoS ONE 10 (2015) 3
PloS One, 10 (3), 2015
PLoS ONE
PLoS ONE, 10(3)
PLoS ONE 10 (2015) 3
PloS One, 10 (3), 2015
PLoS ONE
A variety of methods that predict human nonsynonymous single nucleotide polymorphisms (SNPs) to be neutral or disease-associated have been developed over the last decade. These methods are used for pinpointing disease-associated variants in the many
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::08528349eff6044c6fbb0fc11df260ab
http://europepmc.org/articles/PMC4380319?pdf=render
http://europepmc.org/articles/PMC4380319?pdf=render
Publikováno v:
BMC Bioinformatics, 15, 2014
BMC Bioinformatics
BMC Bioinformatics
Background Amino acid sequences and features extracted from such sequences have been used to predict many protein properties, such as subcellular localization or solubility, using classifier algorithms. Although software tools are available for both
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3e72e8a5367fb37334c1fa07945c16ab
http://resolver.tudelft.nl/uuid:ea7e9c1b-abfa-4575-901a-6b5a83a49b44
http://resolver.tudelft.nl/uuid:ea7e9c1b-abfa-4575-901a-6b5a83a49b44
Autor:
Bastiaan A. van den Berg, Jan Metske Van Der Laan, Johannes A. Roubos, Marcel J. T. Reinders, Dick de Ridder
Publikováno v:
Protein Engineering, Design & Selection, 27(9), 281-288
Protein Engineering, Design & Selection 27 (2014) 9
Protein Engineering, Design & Selection 27 (2014) 9
Protein redesign methods aim to improve a desired property by carefully selecting mutations in relevant regions guided by protein structure. However, often protein structural requirements underlying biological characteristics are not well understood.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::64e485b03bb3aa187ffa135adffe41ee
https://research.wur.nl/en/publications/protein-redesign-by-learning-from-data
https://research.wur.nl/en/publications/protein-redesign-by-learning-from-data
Autor:
Johannes Andries Roubos, Liang Wu, Bastiaan A. van den Berg, Marcel J. T. Reinders, Herman Jan Pel, Marc Hulsman, Dick de Ridder
Publikováno v:
PLoS ONE, Vol 7, Iss 10, p e45869 (2012)
PLoS ONE
PLoS ONE, 7 (10), 2012
PLoS ONE
PLoS ONE, 7 (10), 2012
Protein sequence features are explored in relation to the production of over-expressed extracellular proteins by fungi. Knowledge on features influencing protein production and secretion could be employed to improve enzyme production levels in indust
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::143bfb0cd23a164abf099d4f0438075d
http://europepmc.org/articles/PMC3462195?pdf=render
http://europepmc.org/articles/PMC3462195?pdf=render
Autor:
Marcel J. T. Reinders, Herman Jan Pel, Bastiaan A. van den Berg, Dick de Ridder, Jurgen F. Nijkamp, Liang Wu, Johannes Andries Roubos
Publikováno v:
Pattern Recognition in Bioinformatics ISBN: 9783642160004
PRIB
PRIB
The cell-factory A spergillus niger is widely used for industrial enzyme production. To select potential proteins for large-scale production, we developed a sequence-based classifier that predicts if an over-expressed homologous protein will successf
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e123ee560f7f2a16ef84ea7d30c5b31b
https://doi.org/10.1007/978-3-642-16001-1_1
https://doi.org/10.1007/978-3-642-16001-1_1