Zobrazeno 1 - 10
of 289
pro vyhledávání: '"Basten L"'
Autor:
Ernestina Hauptfeld, Nikolaos Pappas, Sandra van Iwaarden, Basten L. Snoek, Andrea Aldas-Vargas, Bas E. Dutilh, F. A. Bastiaan von Meijenfeldt
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-12 (2024)
Abstract Metagenomic analysis typically includes read-based taxonomic profiling, assembly, and binning of metagenome-assembled genomes (MAGs). Here we integrate these steps in Read Annotation Tool (RAT), which uses robust taxonomic signals from MAGs
Externí odkaz:
https://doaj.org/article/c986f03d3d0842d1b8ca141546579f12
Autor:
Gilles Vismans, Sietske van Bentum, Jelle Spooren, Yang Song, Pim Goossens, Josep Valls, Basten L. Snoek, Benjamin Thiombiano, Mario Schilder, Lemeng Dong, Harro J. Bouwmeester, Pierre Pétriacq, Corné M. J. Pieterse, Peter A. H. M. Bakker, Roeland L. Berendsen
Publikováno v:
Scientific Reports, Vol 12, Iss 1, Pp 1-12 (2022)
Abstract Plants deposit photosynthetically-fixed carbon in the rhizosphere, the thin soil layer directly around the root, thereby creating a hospitable environment for microbes. To manage the inhabitants of this nutrient-rich environment, plant roots
Externí odkaz:
https://doaj.org/article/1f5193ae4ef54f5c99cdb2a29e0eaef9
Autor:
Ben O. Oyserman, Stalin Sarango Flores, Thom Griffioen, Xinya Pan, Elmar van der Wijk, Lotte Pronk, Wouter Lokhorst, Azkia Nurfikari, Joseph N. Paulson, Mercedeh Movassagh, Nejc Stopnisek, Anne Kupczok, Viviane Cordovez, Víctor J. Carrión, Wilco Ligterink, Basten L. Snoek, Marnix H. Medema, Jos M. Raaijmakers
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-16 (2022)
Genetics factors involved in rhizosphere microbiomes assembly remain largely elusive. Here, the authors integrate microbiomics and quantitative plant genetics to reveal genetic loci associated with specific microbes and rhizobacterial traits underlyi
Externí odkaz:
https://doaj.org/article/499c7c7c3e5340bf83c23e2b7e9bf1f6
Autor:
Marijke H van Wijk, Joost A G Riksen, Mark Elvin, Gino B Poulin, Muhammad I Maulana, Jan E Kammenga, Basten L Snoek, Mark G Sterken
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 13, Iss 5 (2023)
AbstractGenetic perturbation in different genetic backgrounds can cause a range of phenotypes within a species. These phenotypic differences can be the result of the interaction between the genetic background and the perturbation. Previously, we repo
Externí odkaz:
https://doaj.org/article/0c57ecc006e44566ba4d4b49541f8c6e
Autor:
Margi Hartanto, Ronny V. L. Joosen, Basten L. Snoek, Leo A. J. Willems, Mark G. Sterken, Dick de Ridder, Henk W. M. Hilhorst, Wilco Ligterink, Harm Nijveen
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 10, Iss 11, Pp 4215-4226 (2020)
Seed germination is characterized by a constant change of gene expression across different time points. These changes are related to specific processes, which eventually determine the onset of seed germination. To get a better understanding on the re
Externí odkaz:
https://doaj.org/article/446a4575824e42a2a500e5b84b9ffa1b
Autor:
Sonia Pascoal, Judith E. Risse, Xiao Zhang, Mark Blaxter, Timothee Cezard, Richard J. Challis, Karim Gharbi, John Hunt, Sujai Kumar, Emma Langan, Xuan Liu, Jack G. Rayner, Michael G. Ritchie, Basten L. Snoek, Urmi Trivedi, Nathan W. Bailey
Publikováno v:
Evolution Letters, Vol 4, Iss 1, Pp 19-33 (2020)
Abstract Evolutionary adaptation is generally thought to occur through incremental mutational steps, but large mutational leaps can occur during its early stages. These are challenging to study in nature due to the difficulty of observing new genetic
Externí odkaz:
https://doaj.org/article/195f5b157407430f9140b6a31bb60cb8
Publikováno v:
Quantitative Plant Biology, Vol 3 (2022)
Information processing is an essential part of biology, enabling coordination of intra-organismal processes such as development, environmental adaptation and inter-organismal communication. Whilst in animals with specialised brain tissue a substantia
Externí odkaz:
https://doaj.org/article/3990036441df4f059f7f561df4f0adec
Autor:
Lisa van Sluijs, Kobus J. Bosman, Frederik Pankok, Tatiana Blokhina, Jop I. H. A. Wilten, Dennie M. te Molder, Joost A. G. Riksen, Basten L. Snoek, Gorben P. Pijlman, Jan E. Kammenga, Mark G. Sterken
Publikováno v:
Frontiers in Cellular and Infection Microbiology, Vol 11 (2022)
Genetic variation in host populations may lead to differential viral susceptibilities. Here, we investigate the role of natural genetic variation in the Intracellular Pathogen Response (IPR), an important antiviral pathway in the model organism Caeno
Externí odkaz:
https://doaj.org/article/f5d75098e27a4f4eb15435de113510a4
Autor:
Katharina Jovic, Jacopo Grilli, Mark G. Sterken, Basten L. Snoek, Joost A. G. Riksen, Stefano Allesina, Jan E. Kammenga
Publikováno v:
BMC Biology, Vol 17, Iss 1, Pp 1-12 (2019)
Abstract Background The detrimental effects of a short bout of stress can persist and potentially turn lethal, long after the return to normal conditions. Thermotolerance, which is the capacity of an organism to withstand relatively extreme temperatu
Externí odkaz:
https://doaj.org/article/e7b73162ed32440c8b0728b98f6f9b9c
Autor:
Basten L Snoek, Mark G Sterken, Harm Nijveen, Rita J M Volkers, Joost Riksen, Philip C Rosenstiel, Hinrich Schulenburg, Jan E Kammenga
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 11, Iss 10 (2021)
AbstractStudying genetic variation of gene expression provides a powerful way to unravel the molecular components underlying complex traits. Expression quantitative trait locus (eQTL) studies have been performed in several different model species, ye
Externí odkaz:
https://doaj.org/article/8a271855b44b44749eab8608377d268b