Zobrazeno 1 - 9
of 9
pro vyhledávání: '"Barbora Kozlikova"'
Autor:
Katarína Furmanová, Jan Byška, Eduard M. Gröller, Ivan Viola, Jan J. Paleček, Barbora Kozlíková
Publikováno v:
BMC Bioinformatics, Vol 19, Iss 1, Pp 1-17 (2018)
Abstract Background Studying the patterns of protein-protein interactions (PPIs) is fundamental for understanding the structure and function of protein complexes. The exploration of the vast space of possible mutual configurations of interacting prot
Externí odkaz:
https://doaj.org/article/1313da42c8184e1cbb49ce6ddf24bd2e
Autor:
Eva Chovancova, Antonin Pavelka, Petr Benes, Ondrej Strnad, Jan Brezovsky, Barbora Kozlikova, Artur Gora, Vilem Sustr, Martin Klvana, Petr Medek, Lada Biedermannova, Jiri Sochor, Jiri Damborsky
Publikováno v:
PLoS Computational Biology, Vol 8, Iss 10, p e1002708 (2012)
Tunnels and channels facilitate the transport of small molecules, ions and water solvent in a large variety of proteins. Characteristics of individual transport pathways, including their geometry, physico-chemical properties and dynamics are instrume
Externí odkaz:
https://doaj.org/article/291f1b72633147e3a03d80fd1180ac09
Autor:
Pavol Ulbrich, Manuela Waldner, Katarina Furmanova, Sergio M. Marques, David Bednar, Barbora Kozlikova, Jan Byska
Publikováno v:
IEEE Transactions on Visualization and Computer Graphics
We present sMolBoxes, a dataflow representation for the exploration and analysis of long molecular dynamics (MD) simulations. When MD simulations reach millions of snapshots, a frame-by-frame observation is not feasible anymore. Thus, biochemists rel
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fe8eb300a63407ed17f693844c5359c3
http://arxiv.org/abs/2209.11771
http://arxiv.org/abs/2209.11771
Autor:
Joan Planas-Iglesias, Filip Opaleny, Pavol Ulbrich, Jan Stourac, Zainab Sanusi, Gaspar P Pinto, Andrea Schenkmayerova, Jan Byska, Jiri Damborsky, Barbora Kozlikova, David Bednar
Publikováno v:
Nucleic acids research
The transplantation of loops between structurally related proteins is a compelling method to improve the activity, specificity and stability of enzymes. However, despite the interest of loop regions in protein engineering, the available methods of lo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4cdd029ea8d5a4a2e7dafc4599807b1c
https://pubmed.ncbi.nlm.nih.gov/35438789
https://pubmed.ncbi.nlm.nih.gov/35438789
Autor:
Katarína Furmanová, Barbora Kozlíková, Thomas Höllt, M. Eduard Gröller, Bernhard Preim, Renata Georgia Raidou
This book provides an overview of the many visualization strategies that have been proposed in recent decades for solving problems within the disciplines of medicine and biology. It also evaluates which visualization techniques applied to various are
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2074
Networks of protein-protein interactions (PPI) constitute either stable or transient complexes in every cell. Most of the cellular complexes keep their function, and therefore stay similar, during evolution. The evolutionary constraints preserve most
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::3932193cd57d00f4f612c0c3cd694ecb
https://pubmed.ncbi.nlm.nih.gov/31583632
https://pubmed.ncbi.nlm.nih.gov/31583632
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 1685
Protein tunnels connecting the functional buried cavities with bulk solvent and protein channels, enabling the transport through biological membranes, represent the structural features that govern the exchange rates of ligands, ions, and water solven
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::dbc68ab37a4669f300eae5cd02c86679
https://pubmed.ncbi.nlm.nih.gov/29086302
https://pubmed.ncbi.nlm.nih.gov/29086302
Publikováno v:
PLoS ONE, Vol 18, Iss 11, p e0293592 (2023)
The representations of biochemical processes must balance visual portrayals with descriptive content to be an effective learning tool. To determine what type of representation is the most suitable for education, we designed five different representat
Externí odkaz:
https://doaj.org/article/2c91a7d73fac4d2fb2396fb093f9cdfe
Publikováno v:
EuroVis 2017
Barbora Kozlikova; Tobias Schreck; Thomas Wischgoll. EuroVis 2017, Jun 2017, Barcelona, Spain. The Eurographics Association, 2017, EuroVis 2017-Short Papers, 978-3-03868-043-7. ⟨10.2312/eurovisshort.20171146⟩
Barbora Kozlikova; Tobias Schreck; Thomas Wischgoll. EuroVis 2017, Jun 2017, Barcelona, Spain. The Eurographics Association, 2017, EuroVis 2017-Short Papers, 978-3-03868-043-7. ⟨10.2312/eurovisshort.20171146⟩
International audience; Visualizations for computational biology have been developing for over 50 years. With recent advances in both computational biology and computer graphics techniques, these fields have witnessed rapid technological advances in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::4d9805cabdab82e8dd5d4c57b39ecf15
https://hal.archives-ouvertes.fr/hal-01644549
https://hal.archives-ouvertes.fr/hal-01644549