Zobrazeno 1 - 10
of 972
pro vyhledávání: '"Barbera D."'
Autor:
Antoine H. C. van Kampen, Utkarsh Mahamune, Aldo Jongejan, Barbera D. C. van Schaik, Daria Balashova, Danial Lashgari, Mia Pras-Raves, Eric J. M. Wever, Adrie D. Dane, Rodrigo García-Valiente, Perry D. Moerland
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-14 (2024)
Abstract Reproducibility of computational research is often challenging despite established guidelines and best practices. Translating these guidelines into practical applications remains difficult. Here, we present ENCORE, an approach to enhance tra
Externí odkaz:
https://doaj.org/article/c42772c7fef5476691f3d97c443e02ee
Autor:
Daria Balashova, Barbera D. C. van Schaik, Maria Stratigopoulou, Jeroen E. J. Guikema, Tom G. Caniels, Mathieu Claireaux, Marit J. van Gils, Anne Musters, Dornatien C. Anang, Niek de Vries, Victor Greiff, Antoine H. C. van Kampen
Publikováno v:
BMC Immunology, Vol 25, Iss 1, Pp 1-22 (2024)
Abstract The reconstruction of clonal families (CFs) in B-cell receptor (BCR) repertoire analysis is a crucial step to understand the adaptive immune system and how it responds to antigens. The BCR repertoire of an individual is formed throughout lif
Externí odkaz:
https://doaj.org/article/4721851a60424610a3e66446a8304cfe
Autor:
Dornatien C. Anang, Hannah A. W. Walter, Johan Lim, Ilse T. G. Niewold, Linda van der Weele, Eleonora Aronica, Filip Eftimov, Joost Raaphorst, Barbera D. C. van Schaik, Antoine H. C. van Kampen, Anneke J. van der Kooi, Niek de Vries
Publikováno v:
Frontiers in Immunology, Vol 14 (2024)
ObjectivesTo characterize the T cell receptor (TCRβ) repertoire in peripheral blood and muscle tissues of treatment naïve patients with newly diagnosed idiopathic inflammatory myopathies (IIMs).MethodsHigh throughput RNA sequencing of the TCRβ cha
Externí odkaz:
https://doaj.org/article/b2ad55ba571d4957af3d083ad5bd7cc6
Autor:
Mathieu Claireaux, Tom G. Caniels, Marlon de Gast, Julianna Han, Denise Guerra, Gius Kerster, Barbera D. C. van Schaik, Aldo Jongejan, Angela I. Schriek, Marloes Grobben, Philip J. M. Brouwer, Karlijn van der Straten, Yoann Aldon, Joan Capella-Pujol, Jonne L. Snitselaar, Wouter Olijhoek, Aafke Aartse, Mitch Brinkkemper, Ilja Bontjer, Judith A. Burger, Meliawati Poniman, Tom P. L. Bijl, Jonathan L. Torres, Jeffrey Copps, Isabel Cuella Martin, Steven W. de Taeye, Godelieve J. de Bree, Andrew B. Ward, Kwinten Sliepen, Antoine H. C. van Kampen, Perry D. Moerland, Rogier W. Sanders, Marit J. van Gils
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-15 (2022)
To fully understand the potential shortcomings of SARS-CoV-2 vaccination, it is necessary to delineate the properties of the antibodies elicited, during immunization, and also infection. Through investigation of the SARS-CoV-2 spike-reactive B cell r
Externí odkaz:
https://doaj.org/article/86312e11f65b467f911c74e87e292a4a
Autor:
Jelle van Schooten, Elinaz Farokhi, Anna Schorcht, Tom L. G. M. van den Kerkhof, Hongmei Gao, Patricia van der Woude, Judith A. Burger, Tim G. Rijkhold Meesters, Tom Bijl, Riham Ghalaiyini, Hannah L. Turner, Jessica Dorning, Barbera D. C. van Schaik, Antoine H. C. van Kampen, Celia C. Labranche, Robyn L. Stanfield, Devin Sok, David C. Montefiori, Dennis R. Burton, Michael S. Seaman, Gabriel Ozorowski, Ian A. Wilson, Rogier W. Sanders, Andrew B. Ward, Marit J. van Gils
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-15 (2022)
HIV-1 vaccine design aims to induce broadly neutralizing antibodies such as IOMA, the only described antibody in its class. Here, the authors present the isolation, characterisation and structure of three additional antibodies within the IOMA class
Externí odkaz:
https://doaj.org/article/00bf4f4cc60648ceb42fb07282abd785
Autor:
Anne Musters, Giulia Balzaretti, Barbera D. C. van Schaik, Aldo Jongejan, Linda van der Weele, Sander W. Tas, Antoine H. C. van Kampen, Niek de Vries
Publikováno v:
Frontiers in Immunology, Vol 13 (2022)
BackgroundIn patients with rheumatoid arthritis (RA) different joints were shown to share the same dominant T-cell clones, suggesting shared characteristics of the inflammatory process and indicating that strategies to selectively target the antigen
Externí odkaz:
https://doaj.org/article/eb91782f629d4ba8ab9ae00853fd42f7
Autor:
Sabrina Pollastro, Marie de Bourayne, Giulia Balzaretti, Aldo Jongejan, Barbera D. C. van Schaik, Ilse T. G. Niewold, Antoine H. C. van Kampen, Bernard Maillère, Niek de Vries
Publikováno v:
Frontiers in Immunology, Vol 11 (2021)
High-throughput T-cell receptor repertoire sequencing constitutes a powerful tool to study T cell responses at the clonal level. However, it does not give information on the functional phenotype of the responding clones and lacks a statistical framew
Externí odkaz:
https://doaj.org/article/a544f06d19f944f1a73b442aee6b2615
Autor:
Rochelle D. Vergroesen, Linda M. Slot, Barbera D. C. van Schaik, Marvyn T. Koning, Theo Rispens, Antoine H. C. van Kampen, René E. M. Toes, Hans U. Scherer
Publikováno v:
Frontiers in Immunology, Vol 10 (2019)
Many autoimmune diseases are hallmarked by autoreactive B and plasma cell responses that are directly or indirectly involved in disease pathogenesis. These B-cell responses show large variability between diseases, both in terms of the secreted autoan
Externí odkaz:
https://doaj.org/article/c7729ac6a2de4397b5caba227729b47e
Autor:
Lia van der Hoek, Silvia D. Olabarriaga, Angela C. Luyf, Barbera D. C. van Schaik, Suzanne Jurriaans, Margreet Bakker, Richard Molenkamp, Sylvie M. Koekkoek, Marta Canuti, Bas B. Oude Munnink, Martin Deijs, Antoine H. C. van Kampen, Michel de Vries
Publikováno v:
Viruses, Vol 4, Iss 8, Pp 1328-1334 (2012)
Virus discovery combining sequence unbiased amplification with next generation sequencing is now state-of-the-art. We have previously determined that the performance of the unbiased amplification technique which is operational at our institute, VIDIS
Externí odkaz:
https://doaj.org/article/27c52d928c5a4a41b74fcc51f4c287ab
Autor:
Balashova, Daria1,2,3 (AUTHOR), van Schaik, Barbera D. C.1,2,3 (AUTHOR), Stratigopoulou, Maria4,5 (AUTHOR), Guikema, Jeroen E. J.4,6 (AUTHOR), Caniels, Tom G.5,7 (AUTHOR), Claireaux, Mathieu5,7 (AUTHOR), van Gils, Marit J.5,7 (AUTHOR), Musters, Anne8,9 (AUTHOR), Anang, Dornatien C.8,9 (AUTHOR), de Vries, Niek8,9 (AUTHOR), Greiff, Victor10 (AUTHOR), van Kampen, Antoine H. C.1,2,3,11 (AUTHOR) a.h.vankampen@amsterdamumc.nl
Publikováno v:
BMC Immunology. 8/2/2024, Vol. 25 Issue 1, p1-22. 22p.