A tissue-specific landscape of sense/antisense transcription in the mouse intestine

Autor: Sina Christian, Kreck Benjamin, Gavrilova Olga, Franke Andre, Häsler Robert, Wittig Michael, Barann Matthias, Klostermeier Ulrich C, Schilhabel Markus B, Schreiber Stefan, Rosenstiel Philip

Publikováno v: BMC Genomics, Vol 12, Iss 1, p 305 (2011)

Abstract Background The intestinal mucosa is characterized by complex metabolic and immunological processes driven highly dynamic gene expression programs. With the advent of next generation sequencing and its utilization for the analysis of the RNA

Externí odkaz: https://doaj.org/article/6ebac3a432f946d8a4508db9ff634b35

Additional file 1 of A tissue-specific landscape of sense/antisense transcription in the mouse intestine

Autor: Klostermeier, Ulrich C, Barann, Matthias, Wittig, Michael, Häsler, Robert, Franke, Andre, Gavrilova, Olga, Kreck, Benjamin, Sina, Christian, Schilhabel, Markus B, Schreiber, Stefan, Rosenstiel, Philip

Additional file 1:Supplementary information. Additional figures for workflow of cDNA fragmentation library protocol, distribution of unique start points of a exemplary gene, and polyadenylated nTARs confirmed by GS-FLX Pyrosequencing. (PDF 199 KB)

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4c39bc3f4d011f85ee946f7cd2832122

MOESM1 of Integrative analysis of single-cell expression data reveals distinct regulatory states in bidirectional promoters

Autor: Ardakani, Fatemeh Behjati, Kattler, Kathrin, NordstrÜm, Karl, Gasparoni, Nina, Gasparoni, Gilles, Fuchs, Sarah, Sinha, Anupam, Barann, Matthias, Ebert, Peter, Fischer, Jonas, Hutter, Barbara, Zipprich, Gideon, Imbusch, Charles, BäRbel Felder, Jßrgen Eils, Brors, Benedikt, Lengauer, Thomas, Manke, Thomas, Rosenstiel, Philip, JÜrn Walter, Schulz, Marcel

Additional file 1. Supplementary methods and results.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::626e687b0400d4f1ca8243412a6923d0

A tissue-specific landscape of sense/antisense transcription in the mouse intestine.

Autor: Klostermeier, Ulrich C¹ (AUTHOR), Barann, Matthias¹ (AUTHOR), Wittig, Michael¹ (AUTHOR), Häsler, Robert¹ (AUTHOR), Franke, Andre¹ (AUTHOR), Gavrilova, Olga¹ (AUTHOR), Kreck, Benjamin¹ (AUTHOR), Sina, Christian^1,2 (AUTHOR), Schilhabel, Markus B¹ (AUTHOR), Schreiber, Stefan^1,2 (AUTHOR) s.schreiber@mucosa.de, Rosenstiel, Philip¹ (AUTHOR) p.rosenstiel@mucosa.de

Publikováno v: BMC Genomics. 6/10/2011, Vol. 12, p1-12. 12p.

Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories

Autor: 't Hoen, Peter A C, Friedländer, Marc R, Almlöf, Jonas, Sammeth, Michael, Pulyakhina, Irina, Anvar, Seyed Yahya, Laros, Jeroen F J, Buermans, Henk P J, Karlberg, Olof, Brännvall, Mathias, van Ommen, Gert-Jan B, Estivill, Xavier, Guigó, Roderic, Syvänen, Ann-Christine, Gut, Ivo G, Dermitzakis, Emmanouil T, Antonarakis, Stylianos E, Brazma, Alvis, Flicek, Paul, Schreiber, Stefan, Rosenstiel, Philip, Meitinger, Thomas, Strom, Tim M, Lehrach, Hans, Sudbrak, Ralf, Carracedo, Angel, van Iterson, Maarten, Monlong, Jean, Lizano, Esther, Bertier, Gabrielle, Ferreira, Pedro G, Ribeca, Paolo, Griebel, Thasso, Beltran, Sergi, Gut, Marta, Kahlem, Katja, Lappalainen, Tuuli, Giger, Thomas, Ongen, Halit, Padioleau, Ismael, Kilpinen, Helena, Gonzàlez-Porta, Mar, Kurbatova, Natalja, Tikhonov, Andrew, Greger, Liliana, Barann, Matthias, Esser, Daniela, Häsler, Robert, Wieland, Thomas, Schwarzmayr, Thomas, Sultan, Marc, Amstislavskiy, Vyacheslav, den Dunnen, Johan T

Publikováno v: Nature Biotechnology; Vol 31
Nature Biotechnology, 31(11), 1015
Nature Biotechnology
Nature Biotechnology, Vol. 31, No 11 (2013) pp. 1015-22

RNA sequencing is an increasingly popular technology for genome-wide analysis of transcript sequence and abundance. However, understanding of the sources of technical and interlaboratory variation is still limited. To address this, the GEUVADIS conso

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b9164a19d72c4504136292508621c587