Manananggal - a novel viewer for alternative splicing events.

Autor: Barann, Matthias¹, Zimmer, Ralf², Birzele, Fabian³ fabian.birzele@roche.com

Publikováno v: BMC Bioinformatics. 2/21/2017, Vol. 18, p1-13. 13p. 1 Color Photograph, 4 Diagrams, 1 Chart, 6 Graphs.

A tissue-specific landscape of sense/antisense transcription in the mouse intestine

Autor: Sina Christian, Kreck Benjamin, Gavrilova Olga, Franke Andre, Häsler Robert, Wittig Michael, Barann Matthias, Klostermeier Ulrich C, Schilhabel Markus B, Schreiber Stefan, Rosenstiel Philip

Publikováno v: BMC Genomics, Vol 12, Iss 1, p 305 (2011)

Abstract Background The intestinal mucosa is characterized by complex metabolic and immunological processes driven highly dynamic gene expression programs. With the advent of next generation sequencing and its utilization for the analysis of the RNA

Externí odkaz: https://doaj.org/article/6ebac3a432f946d8a4508db9ff634b35

A tissue-specific landscape of sense/antisense transcription in the mouse intestine.

Autor: Klostermeier, Ulrich C¹ (AUTHOR), Barann, Matthias¹ (AUTHOR), Wittig, Michael¹ (AUTHOR), Häsler, Robert¹ (AUTHOR), Franke, Andre¹ (AUTHOR), Gavrilova, Olga¹ (AUTHOR), Kreck, Benjamin¹ (AUTHOR), Sina, Christian^1,2 (AUTHOR), Schilhabel, Markus B¹ (AUTHOR), Schreiber, Stefan^1,2 (AUTHOR) s.schreiber@mucosa.de, Rosenstiel, Philip¹ (AUTHOR) p.rosenstiel@mucosa.de

Publikováno v: BMC Genomics. 6/10/2011, Vol. 12, p1-12. 12p.

Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories

Autor: 't Hoen, Peter A C, Friedländer, Marc R, Almlöf, Jonas, Sammeth, Michael, Pulyakhina, Irina, Anvar, Seyed Yahya, Laros, Jeroen F J, Buermans, Henk P J, Karlberg, Olof, Brännvall, Mathias, van Ommen, Gert-Jan B, Estivill, Xavier, Guigó, Roderic, Syvänen, Ann-Christine, Gut, Ivo G, Dermitzakis, Emmanouil T, Antonarakis, Stylianos E, Brazma, Alvis, Flicek, Paul, Schreiber, Stefan, Rosenstiel, Philip, Meitinger, Thomas, Strom, Tim M, Lehrach, Hans, Sudbrak, Ralf, Carracedo, Angel, van Iterson, Maarten, Monlong, Jean, Lizano, Esther, Bertier, Gabrielle, Ferreira, Pedro G, Ribeca, Paolo, Griebel, Thasso, Beltran, Sergi, Gut, Marta, Kahlem, Katja, Lappalainen, Tuuli, Giger, Thomas, Ongen, Halit, Padioleau, Ismael, Kilpinen, Helena, Gonzàlez-Porta, Mar, Kurbatova, Natalja, Tikhonov, Andrew, Greger, Liliana, Barann, Matthias, Esser, Daniela, Häsler, Robert, Wieland, Thomas, Schwarzmayr, Thomas, Sultan, Marc, Amstislavskiy, Vyacheslav, den Dunnen, Johan T

Publikováno v: Nature Biotechnology; Vol 31
Nature Biotechnology, 31(11), 1015
Nature Biotechnology
Nature Biotechnology, Vol. 31, No 11 (2013) pp. 1015-22

RNA sequencing is an increasingly popular technology for genome-wide analysis of transcript sequence and abundance. However, understanding of the sources of technical and interlaboratory variation is still limited. To address this, the GEUVADIS conso

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b9164a19d72c4504136292508621c587

MOESM7 of Epigenetic dynamics of monocyte-to-macrophage differentiation

Autor: Wallner, Stefan, Schröder, Christopher, Leitão, Elsa, Berulava, Tea, Haak, Claudia, Beißer, Daniela, Rahmann, Sven, Richter, Andreas, Manke, Thomas, Bönisch, Ulrike, Arrigoni, Laura, Fröhler, Sebastian, Klironomos, Filippos, Chen, Wei, Rajewsky, Nikolaus, Müller, Fabian, Ebert, Peter, Lengauer, Thomas, Barann, Matthias, Rosenstiel, Philip, Gasparoni, Gilles, Nordström, Karl, Walter, Jörn, Brors, Benedikt, Zipprich, Gideon, Felder, Bärbel, Klein-Hitpass, Ludger, Attenberger, Corinna, Schmitz, Gerd, Horsthemke, Bernhard

Additional file 7: Figure S4. Distance of DMRs to the transcription start sites (TSS) of their associated genes (GREAT).

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1263aa00765d97703b642acb71841f99