Zobrazeno 1 - 10
of 54
pro vyhledávání: '"Baoxing Song"'
Publikováno v:
BMC Genomics, Vol 25, Iss 1, Pp 1-12 (2024)
Abstract Background The short-read whole-genome sequencing (WGS) approach has been widely applied to investigate the genomic variation in the natural populations of many plant species. With the rapid advancements in long-read sequencing and genome as
Externí odkaz:
https://doaj.org/article/6514d280bcff4797b9c1682f265f0033
Autor:
Hongna Li, Lei Hua, Shuqing Zhao, Ming Hao, Rui Song, Shuyong Pang, Yanna Liu, Hong Chen, Wenjun Zhang, Tao Shen, Jin-Ying Gou, Hailiang Mao, Guiping Wang, Xiaohua Hao, Jian Li, Baoxing Song, Caixia Lan, Zaifeng Li, Xing Wang Deng, Jorge Dubcovsky, Xiaodong Wang, Shisheng Chen
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-15 (2023)
Abstract Leaf rust, caused by Puccinia triticina Eriksson (Pt), is one of the most severe foliar diseases of wheat. Breeding for leaf rust resistance is a practical and sustainable method to control this devastating disease. Here, we report the ident
Externí odkaz:
https://doaj.org/article/01d5fa72c37345f0851253825df18807
Autor:
Manisha Munasinghe, Andrew Read, Michelle C Stitzer, Baoxing Song, Claire C Menard, Kristy Yubo Ma, Yaniv Brandvain, Candice N Hirsch, Nathan Springer
Publikováno v:
PLoS Genetics, Vol 19, Iss 12, p e1011086 (2023)
Structural differences between genomes are a major source of genetic variation that contributes to phenotypic differences. Transposable elements, mobile genetic sequences capable of increasing their copy number and propagating themselves within genom
Externí odkaz:
https://doaj.org/article/cb3777760daf403796ec92959ed765e6
Autor:
Guangchao Sun, Huihui Yu, Peng Wang, Martha Lopez-Guerrero, Ravi V. Mural, Olivier N. Mizero, Marcin Grzybowski, Baoxing Song, Karin van Dijk, Daniel P. Schachtman, Chi Zhang, James C. Schnable
Publikováno v:
Genome Biology, Vol 24, Iss 1, Pp 1-27 (2023)
Abstract Background Transcription bridges genetic information and phenotypes. Here, we evaluated how changes in transcriptional regulation enable maize (Zea mays), a crop originally domesticated in the tropics, to adapt to temperate environments. Res
Externí odkaz:
https://doaj.org/article/894ff426acc844deb947c9cc53bd931c
Autor:
Lukas Baumgarten, Bjorn Pieper, Baoxing Song, Sébastien Mane, Janne Lempe, Jonathan Lamb, Elizabeth L Cooke, Rachita Srivastava, Stefan Strütt, Danijela Žanko, Pedro Gp Casimiro, Asis Hallab, Maria Cartolano, Alexander D Tattersall, Bruno Huettel, Dmitry A Filatov, Pavlos Pavlidis, Barbara Neuffer, Christos Bazakos, Hanno Schaefer, Richard Mott, Xiangchao Gan, Carlos Alonso-Blanco, Stefan Laurent, Miltos Tsiantis
Publikováno v:
PLoS Biology, Vol 21, Iss 7, p e3002191 (2023)
We study natural DNA polymorphisms and associated phenotypes in the Arabidopsis relative Cardamine hirsuta. We observed strong genetic differentiation among several ancestry groups and broader distribution of Iberian relict strains in European C. hir
Externí odkaz:
https://doaj.org/article/e6681f117f2c4d098a06db1cf45ba993
Autor:
Fen Wang, Baohui Zhang, Di Wen, Rong Liu, Xinzhuan Yao, Zhi Chen, Ren Mu, Huimin Pei, Min Liu, Baoxing Song, Litang Lu
Publikováno v:
Frontiers in Plant Science, Vol 13 (2022)
The tea plant (Camellia sinensis) is an important economic crop, which is becoming increasingly popular worldwide, and is now planted in more than 50 countries. Tea green leafhopper is one of the major pests in tea plantations, which can significantl
Externí odkaz:
https://doaj.org/article/5a85333f3c04472394947708ffb54dda
Autor:
Xi Wu, Hui Feng, Di Wu, Shijuan Yan, Pei Zhang, Wenbin Wang, Jun Zhang, Junli Ye, Guoxin Dai, Yuan Fan, Weikun Li, Baoxing Song, Zedong Geng, Wanli Yang, Guoxin Chen, Feng Qin, William Terzaghi, Michelle Stitzer, Lin Li, Lizhong Xiong, Jianbing Yan, Edward Buckler, Wanneng Yang, Mingqiu Dai
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-26 (2021)
Abstract Background Drought threatens the food supply of the world population. Dissecting the dynamic responses of plants to drought will be beneficial for breeding drought-tolerant crops, as the genetic controls of these responses remain largely unk
Externí odkaz:
https://doaj.org/article/f5985e14b7f14adda4aa409420da0b44
Autor:
Yaoyao Wu, Lynn Johnson, Baoxing Song, Cinta Romay, Michelle Stitzer, Adam Siepel, Edward Buckler, Armin Scheben
Publikováno v:
The Plant Genome, Vol 15, Iss 2, Pp n/a-n/a (2022)
Abstract Alignments of multiple genomes are a cornerstone of comparative genomics, but generating these alignments remains technically challenging and often impractical. We developed the msa_pipeline workflow (https://bitbucket.org/bucklerlab/msa_pip
Externí odkaz:
https://doaj.org/article/3975d32cfd0c482f9d1e2d58bd5c3ef6
Publikováno v:
Frontiers in Genetics, Vol 10 (2019)
With the broad application of high-throughput sequencing, more whole-genome resequencing data and de novo assemblies of natural populations are becoming available. For a particular species, in general, only the reference genome is well established an
Externí odkaz:
https://doaj.org/article/e7824a5fb7344dff9829734e995bcc16
Publikováno v:
PLoS Genetics, Vol 14, Iss 10, p e1007699 (2018)
Short insertions, deletions (INDELs) and larger structural variants have been increasingly employed in genetic association studies, but few improvements over SNP-based association have been reported. In order to understand why this might be the case,
Externí odkaz:
https://doaj.org/article/a4a74527cd994831bd92f2c83b73628f