Zobrazeno 1 - 10
of 10
pro vyhledávání: '"Banu Dost"'
Autor:
Christopher J. Bakkenist, Rohith Srivas, Banu Dost, Trey Ideker, Nuno Bandeira, Bennett Van Houten, Serah Choi, Thomas P. Conrads, Gregory A. Gibson, Brian L. Hood, Katherine Y. Fu, Simon C. Watkins
ATM is a protein kinase that initiates a well-characterized signaling cascade in cells exposed to ionizing radiation (IR). However, the role for ATM in coordinating critical protein interactions and subsequent exchanges within DNA damage response (DD
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e7b0ec713fdd22c8bd37e74721558809
https://europepmc.org/articles/PMC3495236/
https://europepmc.org/articles/PMC3495236/
Publikováno v:
Journal of computational biology : a journal of computational molecular cell biology. 19(4)
In mass spectrometry-based protein quantification, peptides that are shared across different protein sequences are often discarded as being uninformative with respect to each of the parent proteins. We investigate the use of shared peptides which are
Publikováno v:
IEEE/ACM transactions on computational biology and bioinformatics. 8(3)
Genes with a common function are often hypothesized to have correlated expression levels in mRNA expression data, motivating the development of clustering algorithms for gene expression data sets. We observe that existing approaches do not scale well
Publikováno v:
Lecture Notes in Computer Science ISBN: 9783642020070
RECOMB
RECOMB
In analyzing the proteome using mass spectrometry, the mass values help identify the molecules, and the intensities help quantify them, relative to their abundance in other samples. Peptides that are shared across different protein sequences are typi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::871fc6f8ba36ad98b897bb99c08a985a
https://doi.org/10.1007/978-3-642-02008-7_26
https://doi.org/10.1007/978-3-642-02008-7_26
Publikováno v:
Publons
Molecular interaction databases can be used to study the evolution of molecular pathways across species. Querying such pathways is a challenging computational problem, and recent efforts have been limited to simple queries (paths), or simple networks
Publikováno v:
Lecture Notes in Computer Science ISBN: 9783540716808
RECOMB
RECOMB
Molecular interaction databases can be used to study the evolution of molecular pathways across species. Querying such pathways is a challenging computational problem, and recent efforts have been limited to simple queries (paths), or simple networks
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::5e092ee80d4bb53a54f6b6e4a2c05e6c
https://doi.org/10.1007/978-3-540-71681-5_1
https://doi.org/10.1007/978-3-540-71681-5_1
Autor:
B.L. Hood, Katherine Y. Fu, Banu Dost, B. Van Houten, Trey Ideker, Christopher J. Bakkenist, Rohith Srivas, Thomas P. Conrads, Serah Choi, Nuno Bandeira
Publikováno v:
International Journal of Radiation Oncology*Biology*Physics. 84:S177
Publikováno v:
Journal of Computational Biology; Sep2008, Vol. 15 Issue 7, p913-925, 13p
Publikováno v:
Journal of Computational Biology; Jun2008, Vol. 15 Issue 5, p489-504, 16p
Publikováno v:
Publons
Research in Computational Molecular Biology
Research in Computational Molecular Biology
In this paper, we address the problem of discovering novel non-coding RNA (ncRNA) using primary sequence, and secondary structure conservation, focusing on ncRNA families with pseudo-knotted structures. Our main technical result is an efficient algor
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::18c934c484413933ad8f306d7a3314d3
https://publons.com/publon/32575003/
https://publons.com/publon/32575003/