GraphML-SBGN bidirectional converter for metabolic networks

Autor: Balaur Irina, Roy Ludovic, Touré Vasundra, Mazein Alexander, Auffray Charles

Publikováno v: Journal of Integrative Bioinformatics, Vol 19, Iss 4, Pp 19-41 (2022)

Systems biology researchers need feasible solutions for editing and visualisation of large biological diagrams. Here, we present the ySBGN bidirectional converter that translates metabolic pathways, developed in the general-purpose yEd Graph Editor (

Externí odkaz: https://doaj.org/article/0954849482d548368cb4f309d3ed06d5

The Key Role of Patient Involvement in the Development of Core Outcome Sets in Prostate Cancer

Autor: Smith, Emma Jane, N'Dow, James, Plass, Karin, Ribal, Maria, Mottet, Nicolas, Shepherd, Robert, Moris, Lisa, Lardas, Michael, Van den Broeck, Thomas, Willemse, Peter-Paul, Campi, Riccardo, Gacci, Mauro, Bjartell, Anders, Evans-Axelsson, LU Susan, Briganti, Alberto, Gandaglia, Giorgio, Crosti, Daniele, Meoni, Massimiliano, Garzonio, Roberto, Bangma, Chris, Roobol, Monique, Remmers, Sebastiaan, Tilki, Derya, Auvinen, Anssi, Murtola, Teemu, Visakorpi, Tapio, Talala, Kirsi, Tammela, Teuvo, Siltari, Aino, Van Hemelrijck, Mieke, Beyer, Katharina, Lejeune, Stephane, van Diggelen, Femke, Byrne, Sophie, Fialho, Luz, Cardone, Antonella, Gono, Paulina, De Meulder, Bertrand, Auffray, Charles, Balaur, Irina-Afrodita, Taibi, Nesrine, Power, Shaun, Kermani, Nazanin Zounemat, van Bochove, Kees, Cirillo, Elisa, Moinat, Maxim, Voss, Emma, Horgan, Denis, Fullwood, Louise, Holtorf, Marc, Lancet, Doron, Bernstein, Gabi, Omar, Imran, MacLennan, Sara, MacLennan, Steven, Tripathee, Sheela, Huber, Johannes, Wirth, Manfred, Froehner, Michael, Brenner, Beate, Borkowetz, Angelika, Thomas, Christian, Horn, Friedemann, Reiche, Kristin, Kreuz, Markus, Josefsson, Andreas, Tandefelt, Delila Gasi, Hugosson, Jonas, Schalken, Jack, Huisman, Henkjan, Hofmarcher, Thomas, Lindgren, Peter, Andersson, Emelie, Fridhammar, Adam, Asiimwe, Alex, Verholen, Frank, Zong, Jihong, Butler-Ransohoff, John-Edward, Williamson, Todd, Chandrawansa, Kumari, Waldeck, Reg, Molnar, Megan, Bruno, Amanda, Herrera, Ronald, Nevedomskaya, Ekaterina, Fatoba, Samuel, Constantinovici, Niculae, Mohamed, Ateesha, Steinbeißer, Carl, Kedhagae, Siddhanth, Maass, Monika, Torremante, Patrizia, Voss, Marc Dietrich, Devecseri, Zsuzsanna, Abbott, Tom, Kiran, Amit, Dau, Chad, Papineni, Kishore, Wang-silvanto, Jing, Hass, Steve, Snijder, Robert, Doyé, Verena, Wang, Xuewei, Garnham, Andy, Lambrecht, Mark, Wolfinger, Russ, Rogiers, Stijn, Servan, Angela, Casariego, Joaquin, Samir, Mohamed, Pascoe, Katie, Robinson, Paul, Reich, Christian, Ratwani, Shilpa, Longden-Chapman, Elaine, Burke, Danny, Agapow, Paul, Derkits, Sahra, Licour, Muriel, Ang, Michelle, Payne, Sarah, Yong, Alan, Thompson, Lucy, Le Mare, Sophia, Bussmann, Michael, Köhler, Inken, Juckeland, Guido, Kotik, Daniel, MacLennan, Sara J., Mastris, Ken, Hooker, Gary, Greene, Robert, Briers, Erik, Omar, Muhammad Imran, Healey, Jemma, Venderbos, Lionne D.F., Smith, Emma J., Bjorkqvist, Josefine, Roobol, Monique J., N’Dow, James

Publikováno v: In European Urology Focus September 2021 7(5):943-946

Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0

Autor: Rougny Adrien, Touré Vasundra, Moodie Stuart, Balaur Irina, Czauderna Tobias, Borlinghaus Hanna, Dogrusoz Ugur, Mazein Alexander, Dräger Andreas, Blinov Michael L., Villéger Alice, Haw Robin, Demir Emek, Mi Huaiyu, Sorokin Anatoly, Schreiber Falk, Luna Augustin

Publikováno v: Journal of Integrative Bioinformatics, Vol 16, Iss 2 (2019)

The Systems Biology Graphical Notation (SBGN) is an international community effort that aims to standardise the visualisation of pathways and networks for readers with diverse scientific backgrounds as well as to support an efficient and accurate exc

Externí odkaz: https://doaj.org/article/7dccc9b7f8db45aea9669c8e70d429b8

The cardiomap - a computerised signalling and metabolic map of heart failure mechanisms

Autor: Balaur, Irina, Berndt, Nikolaus, Ostaszewski, Marek, Mazein, Alexander, Wallach, Iwona, Narayanasamy, Shaman, Lebioda, Jacek, Muhammad, Shoaib, Schneider, Reinhard, Nordmeyer, Sarah, Kühne, Titus, Satagopam, Venkata

Here, we introduce the development of the HeartMed cardiomap, which represents a collection of manually-curated diagrams representing metabolic and signalling pathways important for understanding different phenotypes of heart failure, and discuss ong

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d53025ffb10934e4b16829fe18076b7f

Initial FAIR assessment in the HeartMed Project

Autor: Balaur, Irina, Ghosh, Soumyabrata

This is our initial presentation on FAIR assessment in translational medicine projects given within the IMI FAIRplus Fellowship program. Specifically, we discussed our approaches for data FAIRification within the HeartMed ERAPerMed project as well as

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::355db8daee8810eff60fc1e90b0c1ee7