Zobrazeno 1 - 10
of 15
pro vyhledávání: '"Bahar Behsaz"'
Autor:
Donghui Yan, Muqing Zhou, Abhinav Adduri, Yihao Zhuang, Mustafa Guler, Sitong Liu, Hyonyoung Shin, Torin Kovach, Gloria Oh, Xiao Liu, Yuting Deng, Xiaofeng Wang, Liu Cao, David H. Sherman, Pamela J. Schultz, Roland D. Kersten, Jason A. Clement, Ashootosh Tripathi, Bahar Behsaz, Hosein Mohimani
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-15 (2024)
Abstract Type 1 polyketides are a major class of natural products used as antiviral, antibiotic, antifungal, antiparasitic, immunosuppressive, and antitumor drugs. Analysis of public microbial genomes leads to the discovery of over sixty thousand typ
Externí odkaz:
https://doaj.org/article/2b6d42dae54c43a3a35eb103adacd3a6
Autor:
Yi-Yuan Lee, Mustafa Guler, Desnor N. Chigumba, Shen Wang, Neel Mittal, Cameron Miller, Benjamin Krummenacher, Haodong Liu, Liu Cao, Aditya Kannan, Keshav Narayan, Samuel T. Slocum, Bryan L. Roth, Alexey Gurevich, Bahar Behsaz, Roland D. Kersten, Hosein Mohimani
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-17 (2023)
Abstract Recent analyses of public microbial genomes have found over a million biosynthetic gene clusters, the natural products of the majority of which remain unknown. Additionally, GNPS harbors billions of mass spectra of natural products without k
Externí odkaz:
https://doaj.org/article/d0cd311036a049e799043f3d3049ff80
Autor:
Bahar Behsaz, Edna Bode, Alexey Gurevich, Yan-Ni Shi, Florian Grundmann, Deepa Acharya, Andrés Mauricio Caraballo-Rodríguez, Amina Bouslimani, Morgan Panitchpakdi, Annabell Linck, Changhui Guan, Julia Oh, Pieter C. Dorrestein, Helge B. Bode, Pavel A. Pevzner, Hosein Mohimani
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-17 (2021)
Current genome mining methods predict many putative non-ribosomal peptides (NRPs) from their corresponding biosynthetic gene clusters, but it remains unclear which of those exist in nature and how to identify their post-assembly modifications. Here,
Externí odkaz:
https://doaj.org/article/56701c0cd5c2408cb5012222fe11866d
Autor:
Bahar Behsaz, Edna Bode, Alexey Gurevich, Yan-Ni Shi, Florian Grundmann, Deepa Acharya, Andrés Mauricio Caraballo-Rodríguez, Amina Bouslimani, Morgan Panitchpakdi, Annabell Linck, Changhui Guan, Julia Oh, Pieter C. Dorrestein, Helge B. Bode, Pavel A. Pevzner, Hosein Mohimani
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-1 (2021)
Externí odkaz:
https://doaj.org/article/9f001c0a855843f0a381eb501e137b7e
Autor:
Daniel McDonald, Embriette Hyde, Justine W. Debelius, James T. Morton, Antonio Gonzalez, Gail Ackermann, Alexander A. Aksenov, Bahar Behsaz, Caitriona Brennan, Yingfeng Chen, Lindsay DeRight Goldasich, Pieter C. Dorrestein, Robert R. Dunn, Ashkaan K. Fahimipour, James Gaffney, Jack A. Gilbert, Grant Gogul, Jessica L. Green, Philip Hugenholtz, Greg Humphrey, Curtis Huttenhower, Matthew A. Jackson, Stefan Janssen, Dilip V. Jeste, Lingjing Jiang, Scott T. Kelley, Dan Knights, Tomasz Kosciolek, Joshua Ladau, Jeff Leach, Clarisse Marotz, Dmitry Meleshko, Alexey V. Melnik, Jessica L. Metcalf, Hosein Mohimani, Emmanuel Montassier, Jose Navas-Molina, Tanya T. Nguyen, Shyamal Peddada, Pavel Pevzner, Katherine S. Pollard, Gholamali Rahnavard, Adam Robbins-Pianka, Naseer Sangwan, Joshua Shorenstein, Larry Smarr, Se Jin Song, Timothy Spector, Austin D. Swafford, Varykina G. Thackray, Luke R. Thompson, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Alison Vrbanac, Paul Wischmeyer, Elaine Wolfe, Qiyun Zhu, Rob Knight
Publikováno v:
mSystems, Vol 3, Iss 3 (2018)
ABSTRACT Although much work has linked the human microbiome to specific phenotypes and lifestyle variables, data from different projects have been challenging to integrate and the extent of microbial and molecular diversity in human stool remains unk
Externí odkaz:
https://doaj.org/article/0301cbad620f4f3490bc93e225ec5d0c
Publikováno v:
PLoS ONE, Vol 10, Iss 6, p e0130720 (2015)
In this work we studied the liver transcriptomes of two frog species, the American bullfrog (Rana (Lithobates) catesbeiana) and the African clawed frog (Xenopus laevis). We used high throughput RNA sequencing (RNA-seq) data to assemble and annotate t
Externí odkaz:
https://doaj.org/article/07bb5db32a68480a9df5a3b42bb66622
Autor:
Julia Oh, Yan-Ni Shi, Pavel A. Pevzner, Hosein Mohimani, Helge B. Bode, Florian Grundmann, Alexey Gurevich, Changhui Guan, Morgan Panitchpakdi, Amina Bouslimani, Edna Bode, Andrés Mauricio Caraballo-Rodríguez, Bahar Behsaz, Deepa D. Acharya, Annabell Linck, Pieter C. Dorrestein
Publikováno v:
Nature communications, vol 12, iss 1
Nature Communications, Vol 12, Iss 1, Pp 1-17 (2021)
Nature Communications
Nature Communications, Vol 12, Iss 1, Pp 1-17 (2021)
Nature Communications
Non-Ribosomal Peptides (NRPs) represent a biomedically important class of natural products that include a multitude of antibiotics and other clinically used drugs. NRPs are not directly encoded in the genome but are instead produced by metabolic path
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c7dd970b465997bb9044645ce14f6402
https://escholarship.org/uc/item/8j5742vh
https://escholarship.org/uc/item/8j5742vh
Autor:
Jeffrey Yuan, Pavel A. Pevzner, Evgeny Polevikov, Mikhail Rayko, Kristen L. Kuhn, Alexey Gurevich, Derek M. Bickhart, Mikhail Kolmogorov, Bahar Behsaz, Sung Bong Shin, Timothy P. L. Smith
Publikováno v:
Nature methods. 17(11)
Long-read sequencing technologies have substantially improved the assemblies of many isolate bacterial genomes as compared to fragmented short-read assemblies. However, assembling complex metagenomic datasets remains difficult even for state-of-the-a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f21848ed29acdc3acfccb9b1e95484da
https://pubmed.ncbi.nlm.nih.gov/33020656
https://pubmed.ncbi.nlm.nih.gov/33020656
Autor:
Changhui Guan, Amina Bouslimani, Bahar Behsaz, Andrés Mauricio Caraballo-Rodríguez, Yan-Ni Shi, Helge B. Bode, Pieter C. Dorrestein, Pavel A. Pevzner, Annabell Linck, Deepa D. Acharya, Florian Grundmann, Morgan Panitchpakdi, Edna Bode, Alexey Gurevich, Julia Oh, Hosein Mohimani
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-1 (2021)
Nature Communications
Nature Communications
Non-Ribosomal Peptides (NRPs) represent a biomedically important class of natural products that include a multitude of antibiotics and other clinically used drugs. NRPs are not directly encoded in the genome but are instead produced by metabolic path
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b2ac95ea7c9a99a2affff2eacd124dba
https://doaj.org/article/9f001c0a855843f0a381eb501e137b7e
https://doaj.org/article/9f001c0a855843f0a381eb501e137b7e
Autor:
Mark F. Fisher, Bahar Behsaz, Pieter C. Dorrestein, Andrey D. Prjibelski, Joshua S. Mylne, Larry Smarr, Hosein Mohimani, Alexey Gurevich, Pavel A. Pevzner
Publikováno v:
RECOMB
Cyclic and branch cyclic peptides (cyclopeptides) represent an important class of bioactive natural products that include many antibiotics and anti-tumor compounds. However, little is known about cyclopeptides in the human gut, despite the fact that
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::45f40d152d49c6e96e9cfa6f676a29cc
https://doi.org/10.1101/521872
https://doi.org/10.1101/521872