Zobrazeno 1 - 8
of 8
pro vyhledávání: '"Babak Saremi"'
Publikováno v:
BMC Bioinformatics, Vol 24, Iss 1, Pp 1-17 (2023)
Abstract Background Gene expression profiling is a widely adopted method in areas like drug development or functional gene analysis. Microarray data of gene expression experiments is still commonly used and widely available for retrospective analyses
Externí odkaz:
https://doaj.org/article/b55a276bf2b6436f856df202ff6bcc73
Autor:
António A. R. Camarão, Olivia Luise Gern, Felix Stegmann, Felix Mulenge, Bibiana Costa, Babak Saremi, Klaus Jung, Bernd Lepenies, Ulrich Kalinke, Imke Steffen
Publikováno v:
Microbiology Spectrum, Vol 11, Iss 5 (2023)
ABSTRACT The flavivirus non-structural protein 1 (NS1) is secreted from infected cells into the circulation and the serum levels correlate with disease severity. The effect of secreted NS1 (sNS1) on non-infected mammalian immune cells is largely unkn
Externí odkaz:
https://doaj.org/article/8b7b31e7272940889aff0ab0bf7b5f22
Autor:
Babak Saremi, Frederic Gusmag, Ottmar Distl, Frank Schaarschmidt, Julia Metzger, Stefanie Becker, Klaus Jung
Publikováno v:
Scientific Reports, Vol 12, Iss 1, Pp 1-13 (2022)
Abstract Due to the overall high costs, technical replicates are usually omitted in RNA-seq experiments, but several methods exist to generate them artificially. Bootstrapping reads from FASTQ-files has recently been used in the context of other NGS
Externí odkaz:
https://doaj.org/article/4a321b675b6743508591f3e2f9a4856e
Autor:
Magdalena Kircher, Elisa Chludzinski, Jessica Krepel, Babak Saremi, Andreas Beineke, Klaus Jung
Publikováno v:
International Journal of Molecular Sciences, Vol 23, Iss 5, p 2481 (2022)
To better understand the molecular basis of respiratory diseases of viral origin, high-throughput gene-expression data are frequently taken by means of DNA microarray or RNA-seq technology. Such data can also be useful to classify infected individual
Externí odkaz:
https://doaj.org/article/6a71f870d6a74b468ab4ef8b64fe00d9
Autor:
Magdalena Kircher, Elisa Chludzinski, Jessica Krepel, Babak Saremi, Andreas Beineke, Klaus Jung
Publikováno v:
International Journal of Molecular Sciences; Volume 23; Issue 5; Pages: 2481
To better understand the molecular basis of respiratory diseases of viral origin, high-throughput gene-expression data are frequently taken by means of DNA microarray or RNA-seq technology. Such data can also be useful to classify infected individual
Autor:
Babak, Saremi, Frederic, Gusmag, Ottmar, Distl, Frank, Schaarschmidt, Julia, Metzger, Stefanie, Becker, Klaus, Jung
Publikováno v:
Scientific reports. 12(1)
Due to the overall high costs, technical replicates are usually omitted in RNA-seq experiments, but several methods exist to generate them artificially. Bootstrapping reads from FASTQ-files has recently been used in the context of other NGS analyses
Publikováno v:
Computational biology and chemistry. 94
Next-generation sequencing is regularly used to identify viral sequences in DNA or RNA samples of infected hosts. A major step of most pipelines for virus detection is to map sequence reads against known virus genomes. Due to small differences betwee
Publikováno v:
Bioinformatics (Oxford, England). 37(8)
Motivation High-throughput sequencing data can be affected by different technical errors, e.g. from probe preparation or false base calling. As a consequence, reproducibility of experiments can be weakened. In virus metagenomics, technical errors can