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Akademický článek

MicroVIP: Microscopy image simulation on the Virtual Imaging Platform

Autor: Ali Ahmad, Guillaume Vanel, Sorina Camarasu-Pop, Axel Bonnet, Carole Frindel, David Rousseau

Publikováno v: SoftwareX, Vol 16, Iss , Pp 100854- (2021)

MicroVIP is an open source software that assembles, in a unified web-application running on distributed computing resources, simulators of the main fluorescent microscopy imaging modalities (with existing codes or newly developed). MicroVIP provides

Externí odkaz: https://doaj.org/article/444258291499420cab568f8059931f60

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VIP flyer 2022

Autor: Alexandre Cornier, Gaël Vila, Axel Bonnet, Sorina Pop

Flyer giving an overview of the Virtual Imaging Platform

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::df6afaf08a8d284bea767b44946417ff

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Open research: linking the bits and pieces with OpenAIRE-connect

Autor: Camille Maumet, Xavier Rolland, Axel Bonnet, Sorina Camarasu-Pop, Argiro Kokogiannaki, Christian Barillot

Publikováno v: OHBM 2019-25th Annual Meeting of the Organization for Human Brain Mapping
OHBM 2019-25th Annual Meeting of the Organization for Human Brain Mapping, Jun 2019, Rome, Italy. pp.1-6
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International audience; Open research is growing in neuroimaging. The community — supported by funders who want best use of public funding but also by the general public who wants more transparent and participatory research practices — is constan

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::4060f626afd7d0f99fe2d74972f7c320
https://www.hal.inserm.fr/inserm-02151177/document

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Exploiting GPUs on distributed infrastructures for medical imaging applications with VIP and DIRAC

Autor: Sorina Camarasu-Pop, Carole Lartizien, Thomas Grenier, Axel Bonnet, Pascal Wassong, Vanessa Hamar, Fabio Hernandez, Luisa Arrabito, Johan Bregeon, Pierre Gay, Andrei Tsaregorodtsev

Publikováno v: 42nd international convention on information and communication technology, electronics and microelectronics
42nd international convention on information and communication technology, electronics and microelectronics, May 2019, Opatija, Croatia. pp.190-195, ⟨10.23919/mipro.2019.8757075⟩
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ORCID
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Mémoires en Sciences de l'Information et de la Communication
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HAL-UPEC / UPEM
HAL-Inserm
MIPRO

GPU usage has become mandatory for the processing of (3D) medical data, as well as for efficient machine learning approaches such as deep learning. In this contribution, we present how VIP and DIRAC can be leveraged to run medical image processing ap

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f01cb8966c6a41f1590219ddc0983a02
https://hal.archives-ouvertes.fr/hal-02327867

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Enabling Large Scale Data Production for OpenDose with GATE on the EGI Infrastructure

Autor: Axel Bonnet, Gilles Mathieu, Maxime Chauvin, Isabelle Perseil, Manuel Bardiès, Sorina Camarasu-Pop

Publikováno v: 2019 19th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID)
2019 19th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID), May 2019, Larnaca, France. pp.658-665, ⟨10.1109/CCGRID.2019.00084⟩
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Mémoires en Sciences de l'Information et de la Communication
INRIA a CCSD electronic archive server
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International audience; The OpenDose collaboration has been established to generate an open and traceable reference database of dosimetric data for nuclear medicine, using a variety of Monte Carlo codes. The amount of data to generate requires to run

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b45dff9292cada3bdbf4c12462dd92fa
https://www.hal.inserm.fr/inserm-02869860/document

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Open Science for the Neuroinformatics community

Autor: Sorina Camarasu-Pop, Axel Bonnet, Camille Maumet, Michael Kain, Christian Barillot, Tristan Glatard

Publikováno v: DI4R 2018-Digital Infrastructures for Research
DI4R 2018-Digital Infrastructures for Research, Oct 2018, Lisbon, Portugal. pp.1
Digital Infrastructures for Research (DI4R 2018)
Digital Infrastructures for Research (DI4R 2018), Oct 2018, Lisbon, Portugal
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HAL

International audience; The Neuroinformatics community in OpenAire-Connect is represented by members of the France Life Imaging (FLI) collaboration. In this context, we aim at leveraging OpenAire-Connect services and give our community members the po

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::20460a248c431c1521f0b23f30e77a30
https://www.hal.inserm.fr/inserm-01846994

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Boutiques: a flexible framework to integrate command-line applications in computing platforms

Publikováno v: GigaScience
GigaScience, BioMed Central, 2018, 7 (5), ⟨10.1093/gigascience/giy016⟩
GigaScience, 2018, 7 (5), ⟨10.1093/gigascience/giy016⟩

We present Boutiques, a system to automatically publish, integrate, and execute command-line applications across computational platforms. Boutiques applications are installed through software containers described in a rich and flexible JSON language.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dc4ed19c99b01b055ea0469d749c5a26
https://doi.org/10.1093/gigascience/giy016

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Interoperability with Boutiques and CARMIN

Autor: Sorina Camarasu-Pop, Axel Bonnet, Camille Maumet, Michael Kain, Christian Barillot, Tristan Glatard

Publikováno v: HAL
DI4R 2018-Digital Infrastructures for Research
DI4R 2018-Digital Infrastructures for Research, Oct 2018, Lisbon, Portugal. pp.1
Digital Infrastructures for Research (DI4R 2018)
Digital Infrastructures for Research (DI4R 2018), Oct 2018, Lisbon, Portugal
Hyper Article en Ligne

International audience; A growing number of platforms and tools have lately been developed to meet the needs of various scientific communities. Most of these solutions are optimized to specific requirements from different user groups, leading to tech

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::6880d5793d01fe9996011ae83aaa06ca
https://www.hal.inserm.fr/inserm-01846997

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