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Unveiling the Connection between Microbiota and Depressive Disorder through Machine Learning.

Autor: Angelova IY; Vavilov Institute of General Genetics, Russian Academy of Sciences (RAS), 119333 Moscow, Russia., Kovtun AS; Vavilov Institute of General Genetics, Russian Academy of Sciences (RAS), 119333 Moscow, Russia., Averina OV; Vavilov Institute of General Genetics, Russian Academy of Sciences (RAS), 119333 Moscow, Russia., Koshenko TA; Vavilov Institute of General Genetics, Russian Academy of Sciences (RAS), 119333 Moscow, Russia., Danilenko VN; Vavilov Institute of General Genetics, Russian Academy of Sciences (RAS), 119333 Moscow, Russia.

Publikováno v: International journal of molecular sciences [Int J Mol Sci] 2023 Nov 17; Vol. 24 (22). Date of Electronic Publication: 2023 Nov 17.

Multi-level analysis of the gut-brain axis shows autism spectrum disorder-associated molecular and microbial profiles.

Autor: Morton JT; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA.; Biostatistics & Bioinformatics Branch, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, USA., Jin DM; Center for Genomics and Systems Biology, Department of Biology, New York University, New York, NY, USA., Mills RH; Precidiag, Inc., Watertown, MA, USA., Shao Y; Host-Microbiota Interactions Laboratory, Wellcome Sanger Institute, Hinxton, UK., Rahman G; Bioinformatics and Systems Biology Program, University of California, San Diego, La Jolla, CA, USA.; Department of Pediatrics, School of Medicine, University of California, San Diego, La Jolla, CA, USA., McDonald D; Department of Pediatrics, School of Medicine, University of California, San Diego, La Jolla, CA, USA., Zhu Q; School of Life Sciences, Arizona State University, Tempe, AZ, USA.; Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA., Balaban M; Bioinformatics and Systems Biology Program, University of California, San Diego, La Jolla, CA, USA., Jiang Y; Department of Electrical and Computer Engineering, University of California, San Diego, La Jolla, CA, USA., Cantrell K; Department of Pediatrics, School of Medicine, University of California, San Diego, La Jolla, CA, USA.; Department of Computer Science and Engineering, Jacobs School of Engineering, University of California, San Diego, La Jolla, CA, USA., Gonzalez A; Department of Pediatrics, School of Medicine, University of California, San Diego, La Jolla, CA, USA., Carmel J; Azrieli Faculty of Medicine, Bar Ilan University, Safed, Israel., Frankiensztajn LM; Azrieli Faculty of Medicine, Bar Ilan University, Safed, Israel., Martin-Brevet S; Laboratory for Research in Neuroimaging, Centre for Research in Neurosciences, Department of Clinical Neurosciences, Centre Hospitalier Universitaire Vaudois, University of Lausanne, Lausanne, Switzerland., Berding K; Division of Nutritional Sciences, University of Illinois, Urbana, IL, USA., Needham BD; Stark Neurosciences Research Institute, Indiana University School of Medicine, Indianapolis, IN, USA.; Department of Anatomy, Cell Biology and Physiology, Indiana University School of Medicine, Indianapolis, IN, USA., Zurita MF; Microbiology Institute and Health Science College, Universidad San Francisco de Quito, Quito, Ecuador., David M; Departments of Microbiology & Pharmaceutical Sciences, Oregon State University, Corvallis, OR, USA., Averina OV; Vavilov Institute of General Genetics Russian Academy of Sciences, Moscow, Russia., Kovtun AS; Vavilov Institute of General Genetics Russian Academy of Sciences, Moscow, Russia.; Skolkovo Institute of Science and Technology, Skolkovo, Russia., Noto A; Department of Biomedical Sciences, School of Medicine, University of Cagliari, Cagliari, Italy., Mussap M; Laboratory Medicine, Department of Surgical Sciences, School of Medicine, University of Cagliari, Cagliari, Italy., Wang M; Shanghai Key Laboratory of Birth Defects, Division of Neonatology, Children's Hospital of Fudan University, National Center for Children's Health, Shanghai, China.; Microbiome Therapy Center, South China Hospital, Health Science Center, Shenzhen University, Shenzhen, China., Frank DN; Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA., Li E; Department of Medicine, Division of Gastroenterology and Hepatology, Stony Brook University, Stony Brook, NY, USA., Zhou W; Shanghai Key Laboratory of Birth Defects, Division of Neonatology, Children's Hospital of Fudan University, National Center for Children's Health, Shanghai, China., Fanos V; Neonatal Intensive Care Unit and Neonatal Pathology, Department of Surgical Sciences, School of Medicine, University of Cagliari, Cagliari, Italy., Danilenko VN; Vavilov Institute of General Genetics Russian Academy of Sciences, Moscow, Russia., Wall DP; Pediatrics (Systems Medicine), Biomedical Data Science, and Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA., Cárdenas P; Institute of Microbiology, COCIBA, Universidad San Francisco de Quito, Quito, Ecuador., Baldeón ME; Facultad de Ciencias Médicas, de la Salud y la Vida, Universidad Internacional del Ecuador, Quito, Ecuador., Jacquemont S; Sainte Justine Hospital Research Center, Montréal, QC, Canada.; Department of Pediatrics, Université de Montréal, Montréal, QC, Canada., Koren O; Azrieli Faculty of Medicine, Bar Ilan University, Safed, Israel., Elliott E; Azrieli Faculty of Medicine, Bar Ilan University, Safed, Israel.; The Leslie and Susan Gonda Multidisciplinary Brain Research Center, Bar Ilan University, Ramat Gan, Israel., Xavier RJ; Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Department of Molecular Biology, Massachusetts General Hospital, Boston, MA, USA.; Center for the Study of Inflammatory Bowel Disease, Massachusetts General Hospital, Boston, MA, USA., Mazmanian SK; Division of Biology & Biological Engineering, California Institute of Technology, Pasadena, CA, USA., Knight R; Department of Pediatrics, School of Medicine, University of California, San Diego, La Jolla, CA, USA.; Department of Computer Science and Engineering, Jacobs School of Engineering, University of California, San Diego, La Jolla, CA, USA.; Department of Bioengineering, University of California, San Diego, La Jolla, California, USA.; Center for Microbiome Innovation, University of California, San Diego, La Jolla, California, USA., Gilbert JA; Department of Pediatrics, School of Medicine, University of California, San Diego, La Jolla, CA, USA.; Center for Microbiome Innovation, University of California, San Diego, La Jolla, California, USA.; Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, USA., Donovan SM; Division of Nutritional Sciences, University of Illinois, Urbana, IL, USA., Lawley TD; Host-Microbiota Interactions Laboratory, Wellcome Sanger Institute, Hinxton, UK., Carpenter B; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA., Bonneau R; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA.; Center for Genomics and Systems Biology, Department of Biology, New York University, New York, NY, USA.; Prescient Design, a Genentech Accelerator, New York, NY, USA., Taroncher-Oldenburg G; Gaspar Taroncher Consulting, Philadelphia, PA, USA. gtaroncher@gmail.com.; Simons Foundation Autism Research Initiative, Simons Foundation, New York, NY, USA. gtaroncher@gmail.com.

Publikováno v: Nature neuroscience [Nat Neurosci] 2023 Jul; Vol. 26 (7), pp. 1208-1217. Date of Electronic Publication: 2023 Jun 26.

CRISPR-Cas Systems in Gut Microbiome of Children with Autism Spectrum Disorders.

Autor: Zakharevich NV; Vavilov Institute of General Genetics, Russian Academy of Sciences (RAS), 119333 Moscow, Russia., Nikitin MS; Vavilov Institute of General Genetics, Russian Academy of Sciences (RAS), 119333 Moscow, Russia.; Moscow Institute of Physics and Technology, State University, 141701 Dolgoprudny, Russia., Kovtun AS; Vavilov Institute of General Genetics, Russian Academy of Sciences (RAS), 119333 Moscow, Russia.; Skolkovo Institute of Science and Technology, 121205 Moscow, Russia., Malov VO; Faculty of Biology, Lomonosov Moscow State University, 119991 Moscow, Russia., Averina OV; Vavilov Institute of General Genetics, Russian Academy of Sciences (RAS), 119333 Moscow, Russia., Danilenko VN; Vavilov Institute of General Genetics, Russian Academy of Sciences (RAS), 119333 Moscow, Russia.; Moscow Institute of Physics and Technology, State University, 141701 Dolgoprudny, Russia., Artamonova II; Vavilov Institute of General Genetics, Russian Academy of Sciences (RAS), 119333 Moscow, Russia.; Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences (RAS), 127051 Moscow, Russia.

Publikováno v: Life (Basel, Switzerland) [Life (Basel)] 2022 Mar 03; Vol. 12 (3). Date of Electronic Publication: 2022 Mar 03.

Biomarkers and Utility of the Antioxidant Potential of Probiotic Lactobacilli and Bifidobacteria as Representatives of the Human Gut Microbiota.

Autor: Averina OV; Vavilov Institute of General Genetics, Russion Academy of Sciences, 119991 Moscow, Russia., Poluektova EU; Vavilov Institute of General Genetics, Russion Academy of Sciences, 119991 Moscow, Russia., Marsova MV; Vavilov Institute of General Genetics, Russion Academy of Sciences, 119991 Moscow, Russia., Danilenko VN; Vavilov Institute of General Genetics, Russion Academy of Sciences, 119991 Moscow, Russia.; Institute of Ecology, Peoples' Friendship University of Russia (RUDN University), 117198 Moscow, Russia.

Publikováno v: Biomedicines [Biomedicines] 2021 Sep 28; Vol. 9 (10). Date of Electronic Publication: 2021 Sep 28.