Comparative transcriptome in large-scale human and cattle populations

Autor: Yuelin Yao, Shuli Liu, Charley Xia, Yahui Gao, Zhangyuan Pan, Oriol Canela-Xandri, Ava Khamseh, Konrad Rawlik, Sheng Wang, Bingjie Li, Yi Zhang, Erola Pairo-Castineira, Kenton D’Mellow, Xiujin Li, Ze Yan, Cong-jun Li, Ying Yu, Shengli Zhang, Li Ma, John B. Cole, Pablo J. Ross, Huaijun Zhou, Chris Haley, George E. Liu, Lingzhao Fang, Albert Tenesa

Publikováno v: Genome Biology, Vol 23, Iss 1, Pp 1-24 (2022)

Abstract Background Cross-species comparison of transcriptomes is important for elucidating evolutionary molecular mechanisms underpinning phenotypic variation between and within species, yet to date it has been essentially limited to model organisms

Externí odkaz: https://doaj.org/article/8e63f5a62bc44afea9ce80f059475d95

Supplementary Data from Zebrafish MITF-Low Melanoma Subtype Models Reveal Transcriptional Subclusters and MITF-Independent Residual Disease

Autor: E. Elizabeth Patton, Chris P. Ponting, Thierry Voet, Eiríkur Steingrimsson, James A. Lister, Marie E. Mathers, Colin A. Semple, Ramile Dilshat, Michaela Spitzer, Amy Capper, Ailith Ewing, Alessandro Brombin, Thomas Lefevre, Daniel V. Brown, Philippe Gautier, Ava Khamseh, Sonia Wojciechowska, Jana Travnickova

Supplementary File comprising of Supplementary Material and Methods, Supplementary References and Supplementary Figures S1-S7. Figure S1: IHC of melanoma and proliferation markers; Figure S2: Images of fish used for bulk RNA-seq, Figure S3: Heatmaps

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::40ee9f9b2123fa20c5a592c286848f7b
https://doi.org/10.1158/0008-5472.22422093.v1

Higher-order interactions in statistical physics and machine learning: A model-independent solution to the inverse problem at equilibrium

Autor: Sjoerd Viktor Beentjes, Ava Khamseh

Publikováno v: Beentjes, S V & Khamseh, A 2020, ' Higher-order interactions in statistical physics and machine learning: A model-independent solution to the inverse problem at equilibrium ', Physical Review E . https://doi.org/10.1103/physreve.102.053314

The problem of inferring pair-wise and higher-order interactions in complex systems involving large numbers of interacting variables, from observational data, is fundamental to many fields. Known to the statistical physics community as the inverse pr

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3806a30ffa11b128addc329ba44a58cf
http://arxiv.org/abs/2006.06010

Heavy Domain Wall Fermions: The RBC and UKQCD charm physics program

Autor: Luigi Del Debbio, Andreas Jüttner, Ava Khamseh, Oliver Witzel, Peter Boyle, Justus Tobias Tsang

Publikováno v: EPJ Web of Conferences, Vol 175, p 13013 (2018)

We review the domain wall charm physics program of the RBC and UKQCD collaborations based on simulations including ensembles with physical pion mass. We summarise our current set-up and present a status update on the decay constants $f_D$, $f_{D_s}$,

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ea14f8b4148bcfc2b0caff3168e09d6d
https://doaj.org/article/774e1d1d8b0744c2be39b74453d58221

Charm Physics with Domain Wall Fermions and Physical Pion Masses

Autor: Peter Boyle, Oliver Witzel, Luigi Del Debbio, Ava Khamseh, Andreas Jüttner, Francesco Sanfilippo, Justus Tobias Tsang

Publikováno v: INSPIRE-HEP
Scopus-Elsevier

We present RBC/UKQCD's charm project using $N_f=2+1$ flavour ensembles with inverse lattice spacings in the range $1.73-2.77\,\mathrm{GeV}$ and two physical pion mass ensembles. Domain wall fermions are used for the light as well as the charm quarks.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3f62751461d7e3fa749d2286dab5742f
https://doi.org/10.22323/1.256.0278