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Reconstruction of the human amylase locus reveals ancient duplications seeding modern-day variation.
Autor:
Yilmaz F; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Karageorgiou C; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA., Kim K; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Pajic P; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA., Scheer K; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA., Beck CR; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.; University of Connecticut, Institute for Systems Genomics, Storrs, CT, USA.; The University of Connecticut Health Center, Farmington, CT, USA., Torregrossa AM; Department of Psychology, University at Buffalo, Buffalo, NY, USA.; University at Buffalo Center for Ingestive Behavior Research, University at Buffalo, Buffalo, NY, USA., Lee C; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Gokcumen O; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA., Audano PA, Austine-Orimoloye O, Beck CR, Eichler EE, Hallast P, Harvey WT, Hastie AR, Hoekzema K, Hunt S, Korbel JO, Kordosky J, Lee C, Lewis AP, Marschall T, Munson KM, Pang A, Yilmaz F
Publikováno v:
Science (New York, N.Y.) [Science] 2024 Nov 22; Vol. 386 (6724), pp. eadn0609. Date of Electronic Publication: 2024 Nov 22.
Autor:
Logsdon GA; Perelman School of Medicine, University of Pennsylvania, Department of Genetics, Epigenetics Institute, Philadelphia, PA, USA.; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Ebert P; Core Unit Bioinformatics, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University, Düsseldorf, Germany.; Center for Digital Medicine, Heinrich Heine University, Düsseldorf, Germany., Audano PA; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Loftus M; Clemson University, Department of Genetics & Biochemistry, Clemson, SC, USA.; Center for Human Genetics, Clemson University, Greenwood, SC, USA., Porubsky D; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Ebler J; Institute for Medical Biometry and Bioinformatics, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University, Düsseldorf, Germany.; Center for Digital Medicine, Heinrich Heine University, Düsseldorf, Germany., Yilmaz F; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Hallast P; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Prodanov T; Institute for Medical Biometry and Bioinformatics, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University, Düsseldorf, Germany.; Center for Digital Medicine, Heinrich Heine University, Düsseldorf, Germany., Yoo D; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Paisie CA; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Harvey WT; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Zhao X; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, USA., Martino GV; Clemson University, Department of Genetics & Biochemistry, Clemson, SC, USA.; Center for Human Genetics, Clemson University, Greenwood, SC, USA.; Medical University of South Carolina, College of Graduate Studies, Charleston, SC, USA., Henglin M; Institute for Medical Biometry and Bioinformatics, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University, Düsseldorf, Germany.; Center for Digital Medicine, Heinrich Heine University, Düsseldorf, Germany., Munson KM; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Rabbani K; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA., Chin CS; Foundation of Biological Data Sciences, Belmont, CA, USA., Gu B; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA., Ashraf H; Institute for Medical Biometry and Bioinformatics, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University, Düsseldorf, Germany.; Center for Digital Medicine, Heinrich Heine University, Düsseldorf, Germany., Austine-Orimoloye O; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom., Balachandran P; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Bonder MJ; Department of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands; Oncode Institute, Utrecht, The Netherlands.; Division of Computational Genomics and Systems Genetics, German Cancer Research Center, Heidelberg, Germany., Cheng H; Department of Biomedical Informatics and Data Science, Yale School of Medicine, New Haven, CT, USA., Chong Z; Department of Biomedical Informatics and Data Science, Heersink School of Medicine, University of Alabama, Birmingham, AL, USA., Crabtree J; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA., Gerstein M; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA., Guethlein LA; Department of Structural Biology, School of Medicine, Stanford University, Stanford, CA, USA., Hasenfeld P; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany., Hickey G; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA., Hoekzema K; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Hunt SE; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom., Jensen M; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA., Jiang Y; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA., Koren S; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Kwon Y; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Li C; Temple University, Department of Computer and Information Sciences, College of Science and Technology, Philadelphia, PA, USA.; Temple University, Institute for Genomics and Evolutionary Medicine, Philadelphia, PA, USA., Li H; Department of Data Science, Dana-Farber Cancer Institute, Boston, MA, USA.; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA., Li J; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA., Norman PJ; Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA.; Department of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO, USA., Oshima KK; Perelman School of Medicine, University of Pennsylvania, Department of Genetics, Epigenetics Institute, Philadelphia, PA, USA., Paten B; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA., Phillippy AM; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Pollock NR; Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA., Rausch T; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany., Rautiainen M; Institute for Molecular Medicine Finland (FIMM), University of Helsinki, Helsinki, Finland., Scholz S; Institute of Medical Microbiology and Hospital Hygiene, Medical Faculty, Heinrich Heine University, Düsseldorf, Germany., Song Y; Department of Biomedical Informatics and Data Science, Heersink School of Medicine, University of Alabama, Birmingham, AL, USA., Söylev A; Institute for Medical Biometry and Bioinformatics, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University, Düsseldorf, Germany.; Center for Digital Medicine, Heinrich Heine University, Düsseldorf, Germany., Sulovari A; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Surapaneni L; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom., Tsapalou V; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany., Zhou W; Department of Computational Medicine & Bioinformatics, University of Michigan, MI, USA., Zhou Y; Department of Data Science, Dana-Farber Cancer Institute, Boston, MA, USA.; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA., Zhu Q; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.; Stanford Health Care, Palo Alto, CA, USA., Zody MC; New York Genome Center, New York, NY, USA., Mills RE; Department of Computational Medicine & Bioinformatics, University of Michigan, MI, USA., Devine SE; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA., Shi X; Temple University, Department of Computer and Information Sciences, College of Science and Technology, Philadelphia, PA, USA.; Temple University, Institute for Genomics and Evolutionary Medicine, Philadelphia, PA, USA., Talkowski ME; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, USA.; Department of Neurology, Harvard Medical School, Boston, MA, USA., Chaisson MJP; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA., Dilthey AT; Center for Digital Medicine, Heinrich Heine University, Düsseldorf, Germany.; Institute of Medical Microbiology and Hospital Hygiene, Medical Faculty, Heinrich Heine University, Düsseldorf, Germany., Konkel MK; Clemson University, Department of Genetics & Biochemistry, Clemson, SC, USA.; Center for Human Genetics, Clemson University, Greenwood, SC, USA., Korbel JO; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany., Lee C; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Beck CR; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.; The University of Connecticut Health Center, Farmington, CT, USA., Eichler EE; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA., Marschall T; Institute for Medical Biometry and Bioinformatics, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University, Düsseldorf, Germany.; Center for Digital Medicine, Heinrich Heine University, Düsseldorf, Germany.
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2024 Sep 25. Date of Electronic Publication: 2024 Sep 25.