U-net model for brain extraction: Trained on humans for transfer to non-human primates

Autor: Xindi Wang, Xin-Hui Li, Jae Wook Cho, Brian E. Russ, Nanditha Rajamani, Alisa Omelchenko, Lei Ai, Annachiara Korchmaros, Stephen Sawiak, R. Austin Benn, Pamela Garcia-Saldivar, Zheng Wang, Ned H. Kalin, Charles E. Schroeder, R. Cameron Craddock, Andrew S. Fox, Alan C. Evans, Adam Messinger, Michael P. Milham, Ting Xu

Publikováno v: NeuroImage, Vol 235, Iss , Pp 118001- (2021)

Brain extraction (a.k.a. skull stripping) is a fundamental step in the neuroimaging pipeline as it can affect the accuracy of downstream preprocess such as image registration, tissue classification, etc. Most brain extraction tools have been designed

Externí odkaz: https://doaj.org/article/5c0f553bf57442c281861056f0fc633c

Variation in spatial dependencies across the cortical mantle discriminates the functional behaviour of primary and association cortex.

Autor: Leech, Robert, Vos De Wael, Reinder, Váša, František, Xu, Ting, Austin Benn, R., Scholz, Robert, Braga, Rodrigo M., Milham, Michael P., Royer, Jessica, Bernhardt, Boris C., Jones, Emily J. H., Jefferies, Elizabeth, Margulies, Daniel S., Smallwood, Jonathan

Publikováno v: Nature Communications; 9/13/2023, Vol. 14 Issue 1, p1-11, 11p

Brainhack: Developing a culture of open, inclusive, community-driven neuroscience

Autor: Selim Melvin Atay, Iska Moxon-Emre, Anders Eklund, Paula P. Brooks, Nandita Vijayakumar, Anibal Sólon Heinsfeld, Jean-Baptiste Poline, Yaroslav O. Halchenko, David Meunier, Daniela M. Hohmann, Martin Szinte, Arshitha Basavaraj, Andrija Štajduhar, Link Tejavibulya, Michael Dayan, Anisha Keshavan, Chao Jiang, Felix Hoffstaedter, Michael P. Milham, Davide Momi, Hua Xie, Ai Wern Chung, Georg Langs, Hao-Ting Wang, Xenia Kobeleva, Robert Oostenveld, Thomas G. Close, Lena Dorfschmidt, Jesse A. Brown, Serge Koudoro, J.P. Manzano-Patron, Isil P. Bilgin, Shreyas Fadnavis, Sylvain Takerkart, R. Cameron Craddock, Stephan Heunis, Scott Peltier, Kathryn Berluti, Hayli Spence, Pablo F. Damasceno, David H. O’Connor, Eleftherios Garyfallidis, Eugene P. Duff, Rudolph Pienaar, Nicolas Traut, AmanPreet Badhwar, Ali R. Khan, Marissa Laws, Abigail S. Greene, Richard A. I. Bethlehem, Angela R. Laird, Krista DeStasio, Ina Thome, Camille Maumet, Alexandru D. Iordan, P. Christiaan Klink, Damion V. Demeter, John A. Onofrey, Cassandra D. Gould van Praag, Jakub Vohryzek, Suzanne T. Witt, Aysha Motala, Valerie Hayot-Sasson, Geetika Gupta, Alexandre Rosa Franco, John W. VanMeter, Michel Thiebaut de Schotten, James M. Shine, Lucina Q. Uddin, Thomas S. Hartmann, Guillaume Flandin, Clara Moreau, Tomislav Lipic, Claire Bradley, Fernando A. Barrios, Daniel S. Margulies, R. Austin Benn, Sofie Van Den Bossche, Lydia Riedl, Xihe Xie, Christopher R. Madan, Roberto Toro, Viviana Siless, Fabrizio De Vico Fallani, Nikoloz Sirmpilatze, Emily Olafson, Anqi Qiu, Theresa W. Cheng, Valentina Borghesani, Sidhant Chopra, Claire Cury, Giorgio Marinato, Horea-Ioan Ioanas, Giorgia Cona, Michael Joseph, Angela Tam, Mathias Scharinger, Daniel A. Handwerker, Katherine L. Bottenhorn, Sina Mansour L, Kathryn L. Mills, Christopher J. Markiewicz, Elizabeth Levitis, Cyril Pernet, Stephanie J. Forkel, Agah Karakuzu, Edwina R Orchard, Sarah L. Dziura, Saige Rutherford, Kamalaker Dadi, Enrico Glerean, Desiree Lussier, Davide Poggiali, Molly Simmonite, Jason Kai, Jessica Flannery, Ting Xu, Jon Haitz Legarreta, Nasim Anousheh, Marco Bedini, Tristan Glatard, Thomas E. Nichols, Joscelin Rocha-Hidalgo, Erin W. Dickie, Dipankar Bachar, Malin Sandström, Xi-Nian Zuo, Pedro Pinheiro-Chagas, Laura C. Rice, Jakša Vukojević, Javier Gonzalez-Castillo, José C. García Alanis, Lorenzo Pasquini, Yu-Fang Yang, Matteo Mancini, Deena Shariq, Chao-Gan Yan, Laura Tomaz da Silva, César Caballero-Gaudes, Yasmine Bassil, Aurina Arnatkeviciute, Dustin Scheinost, Satrajit S. Ghosh, Gaël Varoquaux, Etienne Combrisson, Bramsh Qamar Chandio, Kelly Garner, Tiago Quendera, Patrick Friedrich, Shawn A. Rhoads, Roxane Licandro, Elizabeth DuPre, Aki Nikolaidis, Simon Schwab, Stephanie Noble, Guillaume Auzias, Daniel J. Lurie, Mahboobeh Parsapoor, Eneko Uruñuela, Andrew Doyle, Peer Herholz, Saampras Ganesan, Vincent Koppelmans, Corey Horien, Samir Das, Junaid S. Merchant, Siyuan Gao, Matheus Marcon, Nathalia Bianchini Esper, B.T. Thomas Yeo, Katja Heuer, Caroline O’Brien, Micaela Y. Chan, Sook-Lei Liew, Lindsay D. Oliver, Kirstie Whitaker, Christoph Vogelbacher, Dylan M. Nielson, Krisanne Litinas, Dorien C. Huijser, Pierre Bellec, R. Todd Constable, David N. Kennedy, Julia Sprenger, Lea-Theresa Mais, Oscar Esteban, Patrick J. Park, Patrick Callahan, Christopher R. Nolan, Johanna Bayer, Guillaume Dumas, Elise Bannier, Elizabeth A. McDevitt, Ariel Rokem, Samuel A. Nastase, Olivia W. Stanley, Ruggero Basanisi, Daniele Marinazzo, Gregory Kiar, Lisa Novello, Samuel Guay, John C. Flournoy, Stefano Moia, Kendra Oudyk, Fang-Cheng Yeh, Gustav Nilsonne, Thomas B. Shaw, Steve Wideman, Saskia Bollmann, Steffen Bollmann, Julia M. Huntenburg, Augusto Buchweitz, Matteo Visconti di Oleggio Castello, Dimitra Maoutsa, Lucy B. Whitmore, Catherine Alice Hahn, Antonino Vallesi, Remi Gau, Felipe Meneguzzi

Publikováno v: Neuron
Neuron, 2021, 109 (11), pp.1769-1775. ⟨10.1016/j.neuron.2021.04.001⟩
Neuron, 109(11), 1769. Cell Press
Addi. Archivo Digital para la Docencia y la Investigación
instname
Neuron 109(11), 1769-1775 (2021). doi:10.1016/j.neuron.2021.04.001
Neuron, vol 109, iss 11
Addi: Archivo Digital para la Docencia y la Investigación
Universidad del País Vasco
Neuron, Elsevier, 2021, 109 (11), pp.1769-1775. ⟨10.1016/j.neuron.2021.04.001⟩
Neuron, Elsevier, 2021, pp.S0896-6273(21)00231-2. ⟨10.1016/j.neuron.2021.04.001⟩

Available online 30 April 2021. Brainhack is an innovative meeting format that promotes scientific collaboration and education in an open, inclusive environment. This NeuroView describes the myriad benefits for participants and the research community

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1a00f1c55be35988569886dbca00dd69
https://doi.org/10.1016/j.neuron.2021.04.001

U-Net Model for Brain Extraction: Trained on Humans for Transfer to Non-human Primates

Autor: Nanditha Rajamani, Michael P. Milham, Brian E. Russ, Zheng Wang, Jae Wook Cho, Alan C. Evans, Andrew S. Fox, Lei Ai, Adam Messinger, Stephen J. Sawiak, Ting Xu, Xinhui Li, Ned H. Kalin, Alisa Omelchenko, R. Austin Benn, Charles E. Schroeder, Annachiara Korchmaros, Xindi Wang, R. Cameron Craddock, Pamela Garcia-Saldivar

Brain extraction (a.k.a. skull stripping) is a fundamental step in the neuroimaging pipeline as it can affect the accuracy of downstream preprocess such as image registration, tissue classification, etc. Most brain extraction tools have been designed

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::1d623663a7d42feca74288ed401a7128
https://doi.org/10.1101/2020.11.17.385898

A collaborative resource platform for non-human primate neuroimaging

Autor: Pamela Garcia-Saldivar, Marcello G. P. Rosa, Daniel R. Glen, Michael P. Milham, Lynn Uhrig, Rogier B. Mars, Rakshit Dadarwal, Xindi Wang, Hugo Merchant, Jakob Seidlitz, Eduardo A. Garza-Villarreal, Ting Xu, Kep Kee Loh, Cirong Liu, Bastien Cagna, Piotr Majka, Henry C. Evrard, Jordy Tasserie, Claude Lepage, Daniel S. Margulies, Adam Messinger, Nikoloz Sirmpilatze, P. Christiaan Klink, Steven Giavasis, Julien Sein, R. Austin Benn, Katja Heuer, Benjamin Jung, Caleb Sponheim, Renée Hartig, Roberto Toro, Paul A. Taylor

Neuroimaging non-human primates (NHPs) is a growing, yet highly specialized field of neuroscience. Resources that were primarily developed for human neuroimaging often need to be significantly adapted for use with NHPs or other animals, which has led

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::b05632ea5f58a8f5a5cdf0537410f4cf
https://doi.org/10.1101/2020.07.31.230185