Zobrazeno 1 - 9
of 9
pro vyhledávání: '"Audra E. Devoto"'
Autor:
Daniela S. Aliaga Goltsman, Lisa M. Alexander, Jyun-Liang Lin, Rodrigo Fregoso Ocampo, Benjamin Freeman, Rebecca C. Lamothe, Andres Perez Rivas, Morayma M. Temoche-Diaz, Shailaja Chadha, Natalie Nordenfelt, Owen P. Janson, Ian Barr, Audra E. Devoto, Gregory J. Cost, Cristina N. Butterfield, Brian C. Thomas, Christopher T. Brown
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-11 (2022)
Programmable, RNA-guided nucleases are diverse enzymes that have been repurposed for biotechnological applications. Here, the authors mine an extensive genome-resolved metagenomics database and identified uncharacterized families of RNA-guided, compa
Externí odkaz:
https://doaj.org/article/7663af1aa1e14736809578ccd16ebe1a
Autor:
Marco A. Crisci, Lin-Xing Chen, Audra E. Devoto, Adair L. Borges, Nicola Bordin, Rohan Sachdeva, Adrian Tett, Allison M. Sharrar, Nicola Segata, Francesco Debenedetti, Mick Bailey, Rachel Burt, Rhiannon M. Wood, Lewis J. Rowden, Paula M. Corsini, Steven van Winden, Mark A. Holmes, Shufei Lei, Jillian F. Banfield, Joanne M. Santini
Publikováno v:
iScience, Vol 24, Iss 8, Pp 102875- (2021)
Summary: Lak phages with alternatively coded ∼540 kbp genomes were recently reported to replicate in Prevotella in microbiomes of humans that consume a non-Western diet, baboons, and pigs. Here, we explore Lak phage diversity and broader distributi
Externí odkaz:
https://doaj.org/article/6fb802688c864ef6b3a40e869846f788
Autor:
Brian C. Thomas, Christopher T. Brown, Audra E. Devoto, Lisa Alexander, Daniela S. Aliaga Goltsman, Cristina N. Butterfield, Justine B. Albers, Jason Liu
Publikováno v:
The CRISPR Journal
Cas12a enzymes are quickly being adopted for use in a variety of genome-editing applications. These programmable nucleases are part of adaptive microbial immune systems, the natural diversity of which has been largely unexplored. Here, we identified
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9da8e14037a59f29b51923a255cd5ed4
http://europepmc.org/articles/PMC7757703
http://europepmc.org/articles/PMC7757703
Autor:
Marco Alberto Crisci, Mick Bailey, Joanne M. Santini, Rohan Sachdeva, Paula M. Corsini, Mark A. Holmes, Rhiannon M. Wood, Lin-Xing Chen, Jillian F. Banfield, Lewis J. Rowden, Rachel Burt, Allison Sharrar, Francesco Debenedetti, Nicola Bordin, Shufei Lei, Audra E. Devoto, Steven Van Winden, Adrian Tett, Nicola Segata, Adair L. Borges
Publikováno v:
iScience, vol 24, iss 8
iScience
iScience, Vol 24, Iss 8, Pp 102875-(2021)
iScience
iScience, Vol 24, Iss 8, Pp 102875-(2021)
Summary Lak phages with alternatively coded ∼540 kbp genomes were recently reported to replicate in Prevotella in microbiomes of humans that consume a non-Western diet, baboons, and pigs. Here, we explore Lak phage diversity and broader distributio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::56a5e95b6e8f6869c07df8a5ef735cf5
https://www.repository.cam.ac.uk/handle/1810/328964
https://www.repository.cam.ac.uk/handle/1810/328964
Autor:
Nicola Segata, Adair L. Borges, Rhiannon M. Wood, Rachel Burt, Marco Alberto Crisci, Adrian Tett, Rohan Sachdeva, Paula M. Corsini, Mick Bailey, Lin-Xing Chen, Francesco Debenedetti, Jillian F. Banfield, Nicola Bordin, Lewis J. Rowden, Mark A. Holmes, Allison Sharrar, Joanne M. Santini, Shufei Lei, Audra E. Devoto
Lak phages with alternatively coded ~540 kbp genomes were recently reported to replicate in Prevotella in the gut microbiomes of humans that consume a non-western diet, baboons and some pigs. Here, we investigate the diversity and broader distributio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::6f3c1e49a24d67f461caf5328f8fa6df
https://doi.org/10.1101/2021.01.08.425732
https://doi.org/10.1101/2021.01.08.425732
Autor:
Frank Møller Aarestrup, Kimberley D. Seed, Audra E. Devoto, Jillian F. Banfield, Ran Blekhman, Matthew R. Olm, Brian C. Thomas, Karthik Anantharaman, Jenny Tung, Patrick Munk, Joanne M. Santini, Elizabeth A. Archie, Peter J. Turnbaugh
Publikováno v:
Nature microbiology, vol 4, iss 4
Devoto, A E, Santini, J M, Olm, M R, Anantharaman, K, Munk, P, Tung, J, Archie, E A, Turnbaugh, P J, Seed, K D, Blekhman, R, Møller Aarestrup, F, Thomas, B C & Banfield, J F 2019, ' Megaphages infect Prevotella and variants are widespread in gut microbiomes ', Nature Microbiology, vol. 4, pp. 693-700 . https://doi.org/10.1038/s41564-018-0338-9
Devoto, A E, Santini, J M, Olm, M R, Anantharaman, K, Munk, P, Tung, J, Archie, E A, Turnbaugh, P J, Seed, K D, Blekhman, R, Møller Aarestrup, F, Thomas, B C & Banfield, J F 2019, ' Megaphages infect Prevotella and variants are widespread in gut microbiomes ', Nature Microbiology, vol. 4, pp. 693-700 . https://doi.org/10.1038/s41564-018-0338-9
Bacteriophages (phages) dramatically shape microbial community composition, redistribute nutrients via host lysis and drive evolution through horizontal gene transfer. Despite their importance, much remains to be learned about phages in the human mic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6d2c3a52ef392251ae6772fab914cac1
https://escholarship.org/uc/item/2tf4r6j9
https://escholarship.org/uc/item/2tf4r6j9
Autor:
Lesley A. Warren, Jennifer A. Doudna, Keith Bouma-Gregson, Rohan Sachdeva, Anne-Catherine Lehours, Christine He, Jamie H. D. Cate, Jinglie Zhou, Ray Keren, Alex D. Thomas, Fred R. Ward, Patrick Munk, Joanne M. Santini, Mary E. Power, Susan T.L. Harrison, Cindy J. Castelle, Alexander J. Probst, Raphaël Méheust, Christine L. Sun, Kari M. Finstad, Adi Lavy, Kelly C. Wrighton, Mikayla A. Borton, Lin-Xing Chen, Jillian F. Banfield, Karthik Anantharaman, Yuki Amano, Brandon Brooks, Ibrahim F. Farag, Daniela S. Aliaga Goltsman, David A. Relman, Ronald Amundson, Alexander L. Jaffe, Paula Matheus-Carnevali, Matthew R. Olm, Wen-Jun Li, Shufei Lei, Audra E. Devoto, Susannah G. Tringe, Tara Colenbrander Nelson, Basem Al-Shayeb, Michael J. Morowitz, Rose S. Kantor
Phage typically have small genomes and depend on their bacterial hosts for replication. DNA sequenced from many diverse ecosystems revealed hundreds of huge phage genomes, between 200 kbp and 716 kbp in length. Thirty-four genomes were manually curat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8b5b0ee9cd7ebb0df9ec3dca5b96ec3d
Autor:
Audra E, Devoto, Joanne M, Santini, Matthew R, Olm, Karthik, Anantharaman, Patrick, Munk, Jenny, Tung, Elizabeth A, Archie, Peter J, Turnbaugh, Kimberley D, Seed, Ran, Blekhman, Frank M, Aarestrup, Brian C, Thomas, Jillian F, Banfield
Publikováno v:
Nature microbiology. 4(4)
Bacteriophages (phages) dramatically shape microbial community composition, redistribute nutrients via host lysis and drive evolution through horizontal gene transfer. Despite their importance, much remains to be learned about phages in the human mic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::7802ba791304994125180b18f92e97ec
https://pubmed.ncbi.nlm.nih.gov/30899107
https://pubmed.ncbi.nlm.nih.gov/30899107
Autor:
Matthew R. Olm, Jenny Tung, Elizabeth A. Archie, Peter J. Turnbaugh, Karthik Anantharaman, Ran Blekhman, Frank Møller Aarestrup, Jillian F. Banfield, Kimberley D. Seed, Patrick Munk, Joanne M. Santini, Brian C. Thomas, Audra E. Devoto
Bacteriophage (phage) dramatically shape microbial community composition, redistribute nutrients via host lysis, and drive evolution through horizontal gene transfer. Despite their importance, much remains to be learned about phage in the human micro
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::49ed733b22e3dd9635efea112bd8a234
https://escholarship.org/uc/item/7jr2168p
https://escholarship.org/uc/item/7jr2168p