Výsledky vyhledávání - "Aubin, Samacoits"

Akademický článek

LOTR: Face Landmark Localization Using Localization Transformer

Autor: Ukrit Watchareeruetai, Benjaphan Sommana, Sanjana Jain, Pavit Noinongyao, Ankush Ganguly, Aubin Samacoits, Samuel W. F. Earp, Nakarin Sritrakool

Publikováno v: IEEE Access, Vol 10, Pp 16530-16543 (2022)

This paper presents a novel Transformer-based facial landmark localization network named Localization Transformer (LOTR). The proposed framework is a direct coordinate regression approach leveraging a Transformer network to better utilize the spatial

Externí odkaz: https://doaj.org/article/f7898488681742af8b39dd68d19c9746

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Akademický článek

Machine Learning-Driven and Smartphone-Based Fluorescence Detection for CRISPR Diagnostic of SARS-CoV‑2

Autor: Aubin Samacoits, Pattaraporn Nimsamer, Oraphan Mayuramart, Naphat Chantaravisoot, Pitchaya Sitthi-amorn, Chajchawan Nakhakes, Lumrung Luangkamchorn, Phongsakhon Tongcham, Ugo Zahm, Suchada Suphanpayak, Natta Padungwattanachoke, Nutcha Leelarthaphin, Hathaichanok Huayhongthong, Trairak Pisitkun, Sunchai Payungporn, Pimkhuan Hannanta-anan

Publikováno v: ACS Omega, Vol 6, Iss 4, Pp 2727-2733 (2021)

Externí odkaz: https://doaj.org/article/a4d581c351df4f8eb3a7d941331950cc

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Akademický článek

A computational framework to study sub-cellular RNA localization

Autor: Aubin Samacoits, Racha Chouaib, Adham Safieddine, Abdel-Meneem Traboulsi, Wei Ouyang, Christophe Zimmer, Marion Peter, Edouard Bertrand, Thomas Walter, Florian Mueller

Publikováno v: Nature Communications, Vol 9, Iss 1, Pp 1-10 (2018)

Automated analysis of RNA localisation in smFISH data has been elusive. Here, the authors simulate and use a large dataset of images to design and validate a framework for highly accurate classification of sub-cellular RNA localisation patterns from

Externí odkaz: https://doaj.org/article/d764029d18694212956189e233896653

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Machine Learning-Driven and Smartphone-Based Fluorescence Detection for CRISPR Diagnostic of SARS-CoV-2

Autor: Lumrung Luangkamchorn, Natta Padungwattanachoke, Naphat Chantaravisoot, Hathaichanok Huayhongthong, Nutcha Leelarthaphin, Chajchawan Nakhakes, Ugo Zahm, Pitchaya Sitthi-Amorn, Suchada Suphanpayak, Sunchai Payungporn, Aubin Samacoits, Trairak Pisitkun, Pimkhuan Hannanta-Anan, Pattaraporn Nimsamer, Oraphan Mayuramart, Phongsakhon Tongcham

Publikováno v: ACS Omega
ACS Omega, Vol 6, Iss 4, Pp 2727-2733 (2021)

Rapid, accurate, and low-cost detection of SARS-CoV-2 is crucial to contain the transmission of COVID-19. Here, we present a cost-effective smartphone-based device coupled with machine learning-driven software that evaluates the fluorescence signals

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9b89b8cd78ab6cdcd1c46176a1781900
https://doi.org/10.1021/acsomega.0c04929

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Computer Vision-aided CRISPR Diagnostics for the Detection of COVID-19

Autor: Aubin Samacoits, Hathaichanok Huayhongthong, Naphat Chantaravisoot, Nutcha Leelarthaphin, Suchada Suphanpayak, Pimkhuan Hannanta-Anan, Oraphan Mayuramart, Sunchai Payungporn, Pattaraporn Nimsamer, Natta Padungwattanachoke, Chajchawan Nakhakes, Trairak Pisitkun

Publikováno v: 2021 7th International Conference on Engineering, Applied Sciences and Technology (ICEAST).

Surveillance testing is a key strategy to control the spread of COVID-19. Unlike the gold standard testing method, quantitative reverse transcription polymerase chain reaction (RT-qPCR), CRISPR diagnostics have recently become a more appealing altern

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::21a15fbc1ac2f5db1485f822d79b4b5d
https://doi.org/10.1109/iceast52143.2021.9426274

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A Dual Protein-mRNA Localization Screen Reveals Compartmentalized Translation and Widespread Co-translational RNA Targeting

Autor: Thomas Walter, Emeline Coleno, Florian Mueller, Adham Safieddine, Xavier Pichon, Nikolay Tsanov, Arthur Imbert, Marie-Cécile Robert, Aubin Samacoits, Edouard Bertrand, Racha Chouaib, Anthony A. Hyman, Kazem Zibara, Christophe Zimmer, Matthias Peter, Ina Poser, Oh Sung Kwon, Hervé Le Hir, Abdel-Meneem Traboulsi

Publikováno v: Developmental Cell
Developmental Cell, Elsevier, 2020, 54 (6), pp.773-791.e5. ⟨10.1016/j.devcel.2020.07.010⟩
Developmental Cell, 2020, 54 (6), pp.773-791.e5. ⟨10.1016/j.devcel.2020.07.010⟩

International audience; Local translation allows spatial control of gene expression. Here, we performed a dual protein-mRNA localization screen, using smFISH on 523 human cell lines expressing GFP-tagged genes. 32 mRNAs displayed specific cytoplasmic

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8aea90d71b33e362e9c5df082e85a4cd
https://hal-pasteur.archives-ouvertes.fr/pasteur-02925687/document

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A localization screen reveals translation factories and widespread co-translational RNA targeting

Autor: Ina Poser, Xavier Pichon, Edouard Bertrand, Nikolay Tsanov, Christophe Zimmer, Emeline Coleno, Hervé Le Hir, Oh Sung Kwon, Adham Safieddine, Thomas Walter, Marie-Cécile Robert, Marion Peter, Abdel-Meneem Traboulsi, Arthur Imbert, Kazem Zibara, Florian Mueller, Aubin Samacoits, Racha Chouaib, Anthony A. Hyman

Publié sur BioRxiv le 21 mai 2020 : https://www.biorxiv.org/content/10.1101/2020.05.20.106989v1; Local translation allows a spatial control of gene expression. Here, we performed a dual protein/mRNA localization screen, using smFISH on 523 human cel

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::09425d51c00754359ab913ba8d44e470
https://hal-pasteur.archives-ouvertes.fr/pasteur-02873144

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A Deep Learning Approach To Identify MRNA Localization Patterns

Autor: Marion Peter, Edouard Bertrand, Aubin Samacoits, Florian Muller, Arthur Imbert, Thomas Walter, Remy Dubois

Publikováno v: ISBI
2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI)
2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI), Apr 2019, Venice, France. pp.1386-1390, ⟨10.1109/ISBI.2019.8759235⟩

The localization of messenger RNA (mRNA) molecules inside cells play an important role for the local control of gene expression. However, the localization patterns of many mRNAs remain unknown and poorly understood. Single Molecule Fluorescence in Si

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5015498f596832175f3ed54a49080800
https://doi.org/10.1109/isbi.2019.8759235

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Visualization of Arenavirus RNA Species in Individual Cells by Single-Molecule Fluorescence In Situ Hybridization Suggests a Model of Cyclical Infection and Clearance during Persistence

Autor: Christopher M. Ziegler, Florian Mueller, Emily A. Bruce, Philip Eisenhauer, Daniel Zenklusen, Benjamin R. King, Aubin Samacoits, Christophe Zimmer, Jason Botten

Publikováno v: Journal of Virology
Journal of Virology, American Society for Microbiology, 2018, 92 (12), pp.e2241-17. ⟨10.1128/JVI.02241-17⟩
Journal of Virology, 2018, 92 (12), pp.e2241-17. ⟨10.1128/JVI.02241-17⟩

Lymphocytic choriomeningitis mammarenavirus (LCMV) is an enveloped, negative-strand RNA virus that causes serious disease in humans but establishes an asymptomatic, lifelong infection in reservoir rodents. Different models have been proposed to descr

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2cc772f98ceaf453b6b3d9dc5f080187
https://hal-pasteur.archives-ouvertes.fr/pasteur-02075021

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