Zobrazeno 1 - 10
of 1 104
pro vyhledávání: '"Atsushi TOYODA"'
Autor:
Takeshi Fujino, Katsushi Yamaguchi, Toshiyuki T. Yokoyama, Toshiya Hamanaka, Yoritaka Harazono, Hiroaki Kamada, Wataru Kobayashi, Tokuko Ujino-Ihara, Kentaro Uchiyama, Asako Matsumoto, Ayako Izuno, Yoshihiko Tsumura, Atsushi Toyoda, Shuji Shigenobu, Yoshinari Moriguchi, Saneyoshi Ueno, Masahiro Kasahara
Publikováno v:
BMC Genomics, Vol 25, Iss 1, Pp 1-16 (2024)
Abstract Background The Japanese cedar (Cryptomeria japonica D. Don) is one of the most important Japanese forest trees, occupying approximately 44% of artificial forests and planted in East Asia, the Azores Archipelago, and certain islands in the In
Externí odkaz:
https://doaj.org/article/e366f62a3e334e1baa31d21d2c733e3a
Autor:
Shunya Kaneko, Keita Miyoshi, Kotaro Tomuro, Makoto Terauchi, Ryoya Tanaka, Shu Kondo, Naoki Tani, Kei-Ichiro Ishiguro, Atsushi Toyoda, Azusa Kamikouchi, Hideki Noguchi, Shintaro Iwasaki, Kuniaki Saito
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-17 (2024)
Abstract Modification of guanosine to N7-methylguanosine (m7G) in the variable loop region of tRNA is catalyzed by the METTL1/WDR4 heterodimer and stabilizes target tRNA. Here, we reveal essential functions of Mettl1 in Drosophila fertility. Knockout
Externí odkaz:
https://doaj.org/article/4ec9e5921ce14741a2f17a3cab3b43ff
Publikováno v:
BMC Genomics, Vol 25, Iss 1, Pp 1-14 (2024)
Abstract Background Cis-regulatory mutations often underlie phenotypic evolution. However, because identifying the locations of promoters and enhancers in non-coding regions is challenging, we have fewer examples of identified causative cis-regulator
Externí odkaz:
https://doaj.org/article/8db53914564f4019a1cd69abc7beae47
Autor:
Yasuhiko Kato, Joel H. Nitta, Christelle Alexa Garcia Perez, Nikko Adhitama, Pijar Religia, Atsushi Toyoda, Wataru Iwasaki, Hajime Watanabe
Publikováno v:
Scientific Reports, Vol 14, Iss 1, Pp 1-9 (2024)
Abstract The cladoceran crustacean Daphnia exhibits phenotypic plasticity, a phenomenon that leads to diverse phenotypes from one genome. Alternative usage of gene isoforms has been considered a key gene regulation mechanism for controlling different
Externí odkaz:
https://doaj.org/article/410b9f7e1465437d93e2ff80ba1af986
Autor:
Keisuke Noguchi, Hidefumi Suzuki, Ryota Abe, Keiko Horiuchi, Rena Onoguchi-Mizutani, Nobuyoshi Akimitsu, Shintaro Ogawa, Tomohiko Akiyama, Yoko Ike, Yoko Ino, Yayoi Kimura, Akihide Ryo, Hiroshi Doi, Fumiaki Tanaka, Yutaka Suzuki, Atsushi Toyoda, Yuki Yamaguchi, Hidehisa Takahashi
Publikováno v:
Cell Reports, Vol 43, Iss 9, Pp 114734- (2024)
Summary: Membrane-less subcellular compartments play important roles in various cellular functions. Although techniques exist to identify components of cellular bodies, a comprehensive method for analyzing both static and dynamic states has not been
Externí odkaz:
https://doaj.org/article/ff790441bf2945d7928f5e867e56e1c7
Autor:
Mariel Galotta, Anh Tuan Dam, Yuhei Eto, Atsushi Toyoda, Takehiko Itoh, Sipra Mohapatra, Yukiko Ogino, Marie Saitou, Michiya Matsuyama, Tapas Chakraborty, Kohei Ohta
Publikováno v:
Frontiers in Marine Science, Vol 11 (2024)
Sexual development and reproduction are largely linked to epigenetic changes in many fish species. However, understanding of epigenetic regulation in scombrid species, such as tunas and mackerels, is limited. This study investigates DNA methylation
Externí odkaz:
https://doaj.org/article/a9eb460e7bf94d95af12c87378b70ba8
Autor:
Makiko Kosugi, Shuji Ohtani, Kojiro Hara, Atsushi Toyoda, Hiroyo Nishide, Shin-Ichiro Ozawa, Yuichiro Takahashi, Yasuhiro Kashino, Sakae Kudoh, Hiroyuki Koike, Jun Minagawa
Publikováno v:
Frontiers in Plant Science, Vol 15 (2024)
Prasiola crispa, an aerial green alga, exhibits remarkable adaptability to the extreme conditions of Antarctica by forming layered colonies capable of utilizing far-red light for photosynthesis. Despite a recent report on the structure of P. crispa
Externí odkaz:
https://doaj.org/article/3ff66e221bde4f35a877794dbbfa2657
Autor:
Takaya Yamasaki, Akira Nishiyama, Nagomi Kurogi, Koutarou Nishimura, Shion Nishida, Daisuke Kurotaki, Tatsuma Ban, Jordan A. Ramilowski, Keiko Ozato, Atsushi Toyoda, Tomohiko Tamura
Publikováno v:
Cell Reports, Vol 43, Iss 4, Pp 114107- (2024)
Summary: The production of type 1 conventional dendritic cells (cDC1s) requires high expression of the transcription factor IRF8. Three enhancers at the Irf8 3′ region function in a differentiation stage-specific manner. However, whether and how th
Externí odkaz:
https://doaj.org/article/e862e22127f7412a8cc2e0bd07f50fc5
Autor:
Miki Okuno, Yuta Mochimaru, Kentaro Matsuoka, Takahiro Yamabe, Luisa Matiz-Ceron, Takamichi Jogahara, Atsushi Toyoda, Asato Kuroiwa, Takehiko Itoh
Publikováno v:
Scientific Data, Vol 10, Iss 1, Pp 1-10 (2023)
Abstract Herein, we present the first high-quality long-read-based chromosome-level genome assemblies and gene annotations of the genomes of three endangered Tokudaia species: Tokudaia osimensis, Tokudaia tokunoshimensis, and Tokudaia muenninki. Thes
Externí odkaz:
https://doaj.org/article/545bd1014de748eeba5d9d974f1e6621
Autor:
Muran Xiao, Shinji Kondo, Masaki Nomura, Shinichiro Kato, Koutarou Nishimura, Weijia Zang, Yifan Zhang, Tomohiro Akashi, Aaron Viny, Tsukasa Shigehiro, Tomokatsu Ikawa, Hiromi Yamazaki, Miki Fukumoto, Atsushi Tanaka, Yasutaka Hayashi, Yui Koike, Yumi Aoyama, Hiromi Ito, Hiroyoshi Nishikawa, Toshio Kitamura, Akinori Kanai, Akihiko Yokoyama, Tohru Fujiwara, Susumu Goyama, Hideki Noguchi, Stanley C. Lee, Atsushi Toyoda, Kunihiko Hinohara, Omar Abdel-Wahab, Daichi Inoue
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-22 (2023)
Abstract ATP-dependent chromatin remodeling SWI/SNF complexes exist in three subcomplexes: canonical BAF (cBAF), polybromo BAF (PBAF), and a newly described non-canonical BAF (ncBAF). While cBAF and PBAF regulate fates of multiple cell types, roles f
Externí odkaz:
https://doaj.org/article/693ff5b078c74b6097e1c14e546c55c7