Zobrazeno 1 - 10
of 51
pro vyhledávání: '"Athanasios, Lykidis"'
Autor:
Iain Anderson, Birte Abt, Athanasios Lykidis, Hans-Peter Klenk, Nikos Kyrpides, Natalia Ivanova
Publikováno v:
PLoS ONE, Vol 7, Iss 6, p e39331 (2012)
Cellulose degrading enzymes have important functions in the biotechnology industry, including the production of biofuels from lignocellulosic biomass. Anaerobes including Clostridium species organize cellulases and other glycosyl hydrolases into larg
Externí odkaz:
https://doaj.org/article/371b4e8457164eaa84f47a6fae4f2ae7
Autor:
Athanasios Lykidis, Danilo Pérez-Pantoja, Thomas Ledger, Kostantinos Mavromatis, Iain J Anderson, Natalia N Ivanova, Sean D Hooper, Alla Lapidus, Susan Lucas, Bernardo González, Nikos C Kyrpides
Publikováno v:
PLoS ONE, Vol 5, Iss 3, p e9729 (2010)
BackgroundCupriavidus necator JMP134 is a Gram-negative beta-proteobacterium able to grow on a variety of aromatic and chloroaromatic compounds as its sole carbon and energy source.Methodology/principal findingsIts genome consists of four replicons (
Externí odkaz:
https://doaj.org/article/0dad813d0d644d2eb50401698a2e07f7
Autor:
Stefan Spring, Carmen Scheuner, Alla Lapidus, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Alex Copeland, Jan-Fang Cheng, Feng Chen, Matt Nolan, Elizabeth Saunders, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Athanasios Lykidis, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Lynne Goodwin, John C. Detter, Thomas Brettin, Manfred Rohde, Markus Göker, Tanja Woyke, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk
Publikováno v:
Archaea, Vol 2010 (2010)
Methanohalophilus mahii is the type species of the genus Methanohalophilus, which currently comprises three distinct species with validly published names. Mhp. mahii represents moderately halophilic methanogenic archaea with a strictly methylotrophic
Externí odkaz:
https://doaj.org/article/3b4a5d2c834e4ef783e42900fe7e6a71
Autor:
Iain Anderson, Luke E Ulrich, Boguslaw Lupa, Dwi Susanti, Iris Porat, Sean D Hooper, Athanasios Lykidis, Magdalena Sieprawska-Lupa, Lakshmi Dharmarajan, Eugene Goltsman, Alla Lapidus, Elizabeth Saunders, Cliff Han, Miriam Land, Susan Lucas, Biswarup Mukhopadhyay, William B Whitman, Carl Woese, James Bristow, Nikos Kyrpides
Publikováno v:
PLoS ONE, Vol 4, Iss 6, p e5797 (2009)
BACKGROUND:Methanomicrobiales is the least studied order of methanogens. While these organisms appear to be more closely related to the Methanosarcinales in ribosomal-based phylogenetic analyses, they are metabolically more similar to Class I methano
Externí odkaz:
https://doaj.org/article/630d89255bee4d5ab985f0e6c3751d9b
Autor:
Konstantinos Mavromatis, Natalia Ivanova, Iain Anderson, Athanasios Lykidis, Sean D Hooper, Hui Sun, Victor Kunin, Alla Lapidus, Philip Hugenholtz, Bharat Patel, Nikos C Kyrpides
Publikováno v:
PLoS ONE, Vol 4, Iss 1, p e4192 (2009)
Halothermothirx orenii is a strictly anaerobic thermohalophilic bacterium isolated from sediment of a Tunisian salt lake. It belongs to the order Halanaerobiales in the phylum Firmicutes. The complete sequence revealed that the genome consists of one
Externí odkaz:
https://doaj.org/article/417f4aa94cad4db1ac8d533c10e0706f
Autor:
Athanasios Lykidis, Aristeidis Kallimanis, Athanasios Velentzas, James Bristow, Konstantinos Liolios, Alicia Clum, Lynne Goodwin, Alla Lapidus, Victor Markowitz, Kurt LaButti, Sam Pitluck, Angelos Perisynakis, Ioanna Pagani, Natalia Ivanova, Christos C. Ouzounis, Krishna Palaniappan, Constantin Drainas, Nikos C. Kyrpides, Amy Chen, Anna I. Koukkou, Konstantinos Mavromatis
Publikováno v:
Standards in Genomic Sciences
Arthrobacter phenanthrenivorans is the type species of the genus, and is able to metabolize phenanthrene as a sole source of carbon and energy. A. phenanthrenivorans is an aerobic, non-motile, and Gram-positive bacterium, exhibiting a rod-coccus grow
Publikováno v:
Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids. 1781:731-742
Phosphatidate phosphatases, PAPs, are key enzymes in lipid biosynthesis and signaling. Type I PAP enzymes participate in de-novo phospholipid biosynthesis, whereas type II PAP enzymes have an established role in lipid signaling. To identify novel hum
Autor:
Victor M. Markowitz, Inna Dubchak, Nikos C. Kyrpides, Philip Hugenholtz, Ernest Szeto, Konstantinos Mavromatis, Ken Chu, Athanasios Lykidis, Natalia Ivanova, Krishna Palaniappan, Daniel Dalevi, Iain Anderson, I-Min A. Chen, Yuri Grechkin
Publikováno v:
Nucleic Acids Research
Markowitz, Victor M.; Ivanova, Natalia N.; Szeto, Ernest; Palaniappan, Krishna; Chu, Ken; Dalevi, Daniel; et al.(2008). IMG/M: A data management and analysis system for metagenomes. Lawrence Berkeley National Laboratory. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/35d1h14b
Markowitz, Victor M.; Ivanova, Natalia N.; Szeto, Ernest; Palaniappan, Krishna; Chu, Ken; Dalevi, Daniel; et al.(2008). IMG/M: A data management and analysis system for metagenomes. Lawrence Berkeley National Laboratory. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/35d1h14b
IMG/M is a data management and analysis system for microbial community genomes (metagenomes) hosted at the Department of Energy's (DOE) Joint Genome Institute (JGI). IMG/M consists of metagenome data integrated with isolate microbial genomes from the
Autor:
Athanasios Lykidis
Publikováno v:
Lykidis, Athanasios. (2006). Comparative genomics and evolution of eukaryotic phospholipid biosynthesis. Lawrence Berkeley National Laboratory. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/6hw2202r
Phospholipid biosynthetic enzymes produce diverse molecular structures and are often present in multiple forms encoded by different genes. This work utilizes comparative genomics and phylogenetics for exploring the distribution, structure and evoluti
Autor:
Athanasios Lykidis, Iain Anderson, Genevieve DiBartolo, Nikos C. Kyrpides, Susan Lucas, Miriam Land, David Wilson, Alex Copeland, Konstantinos Mavromatis, Paul G. Richardson, Alla Lapidus, Natalia Ivanova, Michele Martinez
Publikováno v:
Journal of Bacteriology. 189:2477-2486
Thermobifida fusca is a moderately thermophilic soil bacterium that belongs to Actinobacteria . It is a major degrader of plant cell walls and has been used as a model organism for the study of secreted, thermostable cellulases. The complete genome s