Chronic Trichuris muris Infection in C57BL/6 Mice Causes Significant Changes in Host Microbiota and Metabolome: Effects Reversed by Pathogen Clearance.

Autor: Ashley Houlden, Kelly S Hayes, Allison J Bancroft, John J Worthington, Ping Wang, Richard K Grencis, Ian S Roberts

Publikováno v: PLoS ONE, Vol 10, Iss 5, p e0125945 (2015)

Trichuris species are a globally important and prevalent group of intestinal helminth parasites, in which Trichuris muris (mouse whipworm) is an ideal model for this disease. This paper describes the first ever highly controlled and comprehensive inv

Externí odkaz: https://doaj.org/article/ee7c264ff7fa4073901e02f7a81da854

Detecting macroecological patterns in bacterial communities across independent studies of global soils

Autor: Eveline J. Krab, Angela L. Straathof, Fernando T. Maestre, Si Creer, Manuel Delgado-Baquerizo, Marcel G. A. van der Heijden, Klaus Schlaeppi, Kelly S. Ramirez, Christopher Knight, John Davison, Krista L. McGuire, Brajesh K. Singh, Caroline Orr, Sylvain Monteux, Chris C. Hale, Jennifer M. Bhatnagar, Graeme Fox, Wim H. van der Putten, Franciska T. de Vries, Jennifer D. Rocca, Anne Cotton, Kyle Hartman, Mattias de Hollander, David L. Jones, Bede Constantinides, David A. Robinson, Francis Q. Brearley, Thomas W. Crowther, Ian Roberts, Matthew Shepherd, David Elliott, Ellen Dorrepaal, Ashley Houlden, Cécile Thion, Robert I. Griffiths, Jennifer K. Rowntree

Publikováno v: Nature microbiology, vol 3, iss 2
Nature Microbiology, 3, 189-196
Nature Microbiology 3 (2018)
Ramirez, K S, Knight, C, de Hollander, M, Brearley, F Q, Constantinides, B, Cotton, A, Creer, S, Crowther, T W, Davison, J, Delgado-Baquerizo, M, Dorrepaal, E, Elliott, D R, Fox, G, Griffiths, R, Hale, C, Hartman, K, Houlden, A, Jones, D L, Krab, E J, Maestre, F T, McGuire, K L, Monteux, S, Orr, C H, van der Putten, W H, Roberts, I, Robinson, D A, Rocca, J D, Rowntree, J, Schlaeppi, K, Shepherd, M, Singh, B K, Straathof, A, Bhatnagar, J M, Thion, C, van der Heijden, M G A & De Vries, F 2018, ' Detecting macroecological patterns in bacterial communities across independent studies of global soils ', Nature Microbiology, vol. 3, pp. 189-196 . https://doi.org/10.1038/s41564-017-0062-x
Nature Reviews Microbiology, 3, 189. Nature Publishing Group
Nature Microbiology
Ramirez, KS; Knight, CG; de Hollander, M; Brearley, FQ; Constantinides, B; Cotton, A; et al.(2018). Detecting macroecological patterns in bacterial communities across independent studies of global soils. NATURE MICROBIOLOGY, 3(2), 189-196. doi: 10.1038/s41564-017-0062-x. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/7m35k2mx
Nature Microbiology, 3, 189-196. Nature Publishing Group

The emergence of high-throughput DNA sequencing methods provides unprecedented opportunities to further unravel bacterial biodiversity and its worldwide role from human health to ecosystem functioning. However, despite the abundance of sequencing stu

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::49367f31888a217314a73301bcbad392
https://escholarship.org/uc/item/7m35k2mx

An investigation of the biodiversity of thermophilic and thermotolerant fungal species in composts using culture-based and molecular techniques

Autor: Pauline S. Handley, Adrian Langarica-Fuentes, Geoffrey D. Robson, Graeme Fox, Ashley Houlden

Publikováno v: Fungal Ecology. 11:132-144

In this study, the biodiversity of thermophilous fungi in two different commercial composts was investigated using culture-based methods, denaturing gradient gel electrophoresis (DGGE) and tag-encoded pyrosequencing. 454 pyrosequencing of the interna

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::8abf27798ee7984e90d1b5e5cbccbeb4
https://doi.org/10.1016/j.funeco.2014.05.007

Influence of plant developmental stage on microbial community structure and activity in the rhizosphere of three field crops

Autor: Ashley Houlden, Martin J. Day, Mark J. Bailey, T. M. Timms-Wilson

Publikováno v: FEMS Microbiology Ecology. 65:193-201

Seasonal shifts in rhizosphere microbial populations were investigated to follow the influence of plant developmental stage. A field study of indigenous microbial rhizosphere communities was undertaken on pea (Pisum satvium var. quincy), wheat (Triti

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::71ef941c4affd8df55e7f786b116a76f
https://doi.org/10.1111/j.1574-6941.2008.00535.x

Fungal communities associated with the biodegradation of polyester polyurethane buried under compost at different temperatures

Autor: Urooj Zafar, Geoffrey D. Robson, Ashley Houlden

Publikováno v: Applied and environmental microbiology. 79(23)

Plastics play an essential role in the modern world due to their low cost and durability. However, accumulation of plastic waste in the environment causes wide-scale pollution with long-lasting effects, making plastic waste management expensive and p

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::732b585f5995a1029355f5ae46c01835
https://pubmed.ncbi.nlm.nih.gov/24056469