Zobrazeno 1 - 10
of 35
pro vyhledávání: '"Ashkaan K. Fahimipour"'
Autor:
Gwynne Á. Mhuireach, Ashkaan K. Fahimipour, Roo Vandegrift, Mario E. Muscarella, Roxana Hickey, Ashley C. Bateman, Kevin G. Van Den Wymelenberg, Brendan J. M. Bohannan
Publikováno v:
Environmental Microbiome, Vol 17, Iss 1, Pp 1-13 (2022)
Abstract Background Plants are found in a large percentage of indoor environments, yet the potential for bacteria associated with indoor plant leaves and soil to colonize human skin remains unclear. We report results of experiments in a controlled cl
Externí odkaz:
https://doaj.org/article/2b694cb4aed1492eab3b38f1a5ddad22
Publikováno v:
mSystems, Vol 8, Iss 3 (2023)
ABSTRACT Progress in molecular methods has enabled the monitoring of bacterial populations in time. Nevertheless, understanding community dynamics and its links with ecosystem functioning remains challenging due to the tremendous diversity of microor
Externí odkaz:
https://doaj.org/article/38c7e4907de94fb7a6dc92d9f4662d1e
Autor:
Byron T. Belcher, Eliana H. Bower, Benjamin Burford, Maria Rosa Celis, Ashkaan K. Fahimipour, Isabela L. Guevara, Kakani Katija, Zulekha Khokhar, Anjana Manjunath, Samuel Nelson, Simone Olivetti, Eric Orenstein, Mohamad H. Saleh, Brayan Vaca, Salma Valladares, Stella A. Hein, Andrew M. Hein
Publikováno v:
Frontiers in Marine Science, Vol 10 (2023)
Image-based machine learning methods are becoming among the most widely-used forms of data analysis across science, technology, engineering, and industry. These methods are powerful because they can rapidly and automatically extract rich contextual a
Externí odkaz:
https://doaj.org/article/23d486f8c2d845df86ec59fcfb0dd527
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-12 (2021)
Abstract Body size affects key biological processes across the tree of life, with particular importance for food web dynamics and stability. Traits influencing movement capabilities depend strongly on body size, yet the effects of allometrically-stru
Externí odkaz:
https://doaj.org/article/48fef20076cd44428486279a0ff96f2a
Autor:
Ashkaan K. Fahimipour, Thilo Gross
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-8 (2020)
The ecological niche of a given microbe is difficult to define, but can be approximated from the range of biochemical reactions encoded by its genome. Here the authors use these genomic data and analyze them using manifold learning, which generates a
Externí odkaz:
https://doaj.org/article/3eda249414684e81916914f3baedcb02
Autor:
Suzanne L. Ishaq, Francisco J. Parada, Patricia G. Wolf, Carla Y. Bonilla, Megan A. Carney, Amber Benezra, Emily Wissel, Michael Friedman, Kristen M. DeAngelis, Jake M. Robinson, Ashkaan K. Fahimipour, Melissa B. Manus, Laura Grieneisen, Leslie G. Dietz, Ashish Pathak, Ashvini Chauhan, Sahana Kuthyar, Justin D. Stewart, Mauna R. Dasari, Emily Nonnamaker, Mallory Choudoir, Patrick F. Horve, Naupaka B. Zimmerman, Ariangela J. Kozik, Katherine Weatherford Darling, Adriana L. Romero-Olivares, Janani Hariharan, Nicole Farmer, Katherine A. Maki, Jackie L. Collier, Kieran C. O’Doherty, Jeffrey Letourneau, Jeff Kline, Peter L. Moses, Nicolae Morar
Publikováno v:
mSystems, Vol 6, Iss 4 (2021)
ABSTRACT Humans are inextricably linked to each other and our natural world, and microorganisms lie at the nexus of those interactions. Microorganisms form genetically flexible, taxonomically diverse, and biochemically rich communities, i.e., microbi
Externí odkaz:
https://doaj.org/article/c8465528c7c34733a27c743b7fa353f1
Autor:
Ashkaan K. Fahimipour, Erica M. Hartmann, Andrew Siemens, Jeff Kline, David A. Levin, Hannah Wilson, Clarisse M. Betancourt-Román, GZ Brown, Mark Fretz, Dale Northcutt, Kyla N. Siemens, Curtis Huttenhower, Jessica L. Green, Kevin Van Den Wymelenberg
Publikováno v:
Microbiome, Vol 6, Iss 1, Pp 1-13 (2018)
Abstract Background Microbial communities associated with indoor dust abound in the built environment. The transmission of sunlight through windows is a key building design consideration, but the effects of light exposure on dust communities remain u
Externí odkaz:
https://doaj.org/article/ab28c1993a9b49c8a4242ad50b33acd1
Publikováno v:
Ecosphere, Vol 10, Iss 7, Pp n/a-n/a (2019)
Abstract Omnivory has been cited as an explanation for why trophic cascades are weak in many ecosystems, but empirical support for this prediction is equivocal. Compared to predators that feed only on herbivores, top omnivores—species that feed on
Externí odkaz:
https://doaj.org/article/31450ab4a35c418fa6429557cd4d61a3
Autor:
Ashkaan K. Fahimipour, Sarah Ben Maamar, Alexander G. McFarland, Ryan A. Blaustein, Jing Chen, Adam J. Glawe, Jeff Kline, Jessica L. Green, Rolf U. Halden, Kevin Van Den Wymelenberg, Curtis Huttenhower, Erica M. Hartmann
Publikováno v:
mSystems, Vol 3, Iss 6 (2018)
ABSTRACT Humans purposefully and inadvertently introduce antimicrobial chemicals into buildings, resulting in widespread compounds, including triclosan, triclocarban, and parabens, in indoor dust. Meanwhile, drug-resistant infections continue to incr
Externí odkaz:
https://doaj.org/article/241f4b3553de4572bd6109d4e1c69a34
Autor:
Daniel McDonald, Embriette Hyde, Justine W. Debelius, James T. Morton, Antonio Gonzalez, Gail Ackermann, Alexander A. Aksenov, Bahar Behsaz, Caitriona Brennan, Yingfeng Chen, Lindsay DeRight Goldasich, Pieter C. Dorrestein, Robert R. Dunn, Ashkaan K. Fahimipour, James Gaffney, Jack A. Gilbert, Grant Gogul, Jessica L. Green, Philip Hugenholtz, Greg Humphrey, Curtis Huttenhower, Matthew A. Jackson, Stefan Janssen, Dilip V. Jeste, Lingjing Jiang, Scott T. Kelley, Dan Knights, Tomasz Kosciolek, Joshua Ladau, Jeff Leach, Clarisse Marotz, Dmitry Meleshko, Alexey V. Melnik, Jessica L. Metcalf, Hosein Mohimani, Emmanuel Montassier, Jose Navas-Molina, Tanya T. Nguyen, Shyamal Peddada, Pavel Pevzner, Katherine S. Pollard, Gholamali Rahnavard, Adam Robbins-Pianka, Naseer Sangwan, Joshua Shorenstein, Larry Smarr, Se Jin Song, Timothy Spector, Austin D. Swafford, Varykina G. Thackray, Luke R. Thompson, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Alison Vrbanac, Paul Wischmeyer, Elaine Wolfe, Qiyun Zhu, Rob Knight
Publikováno v:
mSystems, Vol 3, Iss 3 (2018)
ABSTRACT Although much work has linked the human microbiome to specific phenotypes and lifestyle variables, data from different projects have been challenging to integrate and the extent of microbial and molecular diversity in human stool remains unk
Externí odkaz:
https://doaj.org/article/0301cbad620f4f3490bc93e225ec5d0c