Zobrazeno 1 - 10
of 19
pro vyhledávání: '"Artur Jaroszewicz"'
Autor:
Artur Jaroszewicz, Jason Ernst
Publikováno v:
Genome Biology, Vol 24, Iss 1, Pp 1-31 (2023)
Abstract Various computational approaches have been developed to annotate epigenomes on a per-position basis by modeling combinatorial and spatial patterns within epigenomic data. However, such annotations are less suitable for gene-based analyses. W
Externí odkaz:
https://doaj.org/article/4e43563159b244bea8d48984b2129be0
Autor:
Nan Ye Lei, Ziyad Jabaji, Jiafang Wang, Vaidehi S Joshi, Garrett J Brinkley, Hassan Khalil, Fengchao Wang, Artur Jaroszewicz, Matteo Pellegrini, Linheng Li, Michael Lewis, Matthias Stelzner, James C Y Dunn, Martín G Martín
Publikováno v:
PLoS ONE, Vol 9, Iss 1, p e84651 (2014)
Intestinal epithelial stem cells (ISCs) are the focus of recent intense study. Current in vitro models rely on supplementation with the Wnt agonist R-spondin1 to support robust growth, ISC self-renewal, and differentiation. Intestinal subepithelial m
Externí odkaz:
https://doaj.org/article/2eafb19bbe58498395971442cc53b9f9
Autor:
Artur Jaroszewicz, Jason Ernst
BackgroundVarious computational approaches have been developed to annotate epigenomes on a per-position basis by modeling combinatorial and spatial patterns within epigenomic data. However, such annotations are less suitable for gene-based analyses,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::310ade0081ef72148fc0a8e71491eeed
https://doi.org/10.1101/2022.05.24.493345
https://doi.org/10.1101/2022.05.24.493345
Autor:
Jason Ernst, Artur Jaroszewicz
Publikováno v:
Bioinformatics
Motivation Chromatin interactions play an important role in genome architecture and gene regulation. The Hi-C assay generates such interactions maps genome-wide, but at relatively low resolutions (e.g. 5-25 kb), which is substantially coarser than th
Autor:
Jane M. Landolin, Amanda Miller, Omid Shams Solari, Adam Harvey, Christina Curtis, Peter J. Tonellato, Stefanie S. Jeffrey, Nathan Boley, Anshul Kundaje, George W. Sledge, Paul G. Giresi, Artur Jaroszewicz, Erik Gafni, Mouadh Barbirou
Publikováno v:
Cancer Research. 81:2105-2105
Introduction: Chromatin accessibility and cell-free DNA fragmentation patterns can be used to identify epigenomic mechanisms (Sharma et al. 2010) and infer cell-types contributing to cfDNA in pathological states such as cancer (Snyder et al. 2016; Ul
Autor:
John A. St John, Erik Gafni, Brandon White, Ajay Kannan, Loren Hansen, Artur Jaroszewicz, Anshul Kundaje, Nathan Boley
Publikováno v:
Cancer Research. 79:4349-4349
The ability to use a blood sample to determine the transcriptional state of cells that are releasing DNA into the bloodstream of a patient may be helpful in a variety of clinical applications. Here we present a case study of a gene expression predict
Autor:
Pao-Yang Chen, Matteo Pellegrini, Davin Ashraf, Atsushi Nakano, Sherin U. Devaskar, Luz D. Orozco, Artur Jaroszewicz, Amit Ganguly, Steve E. Jacobsen, Marco Morselli, Liudmilla Rubbi, Suhua Feng
Publikováno v:
Physiological Genomics. 45:565-576
Maternal nutrient restriction causes the development of adult onset chronic diseases in the intrauterine growth restricted (IUGR) fetus. Investigations in mice have shown that either protein or calorie restriction during pregnancy leads to glucose in
Autor:
Artur Jaroszewicz, Matteo Pellegrini, Owen N. Witte, Amanda M. Schafenacker, Deanna M. Janzen, Sanaz Memarzadeh, Andrew S. Goldstein, Donghui Cheng, Daniel Y. Paik
Publikováno v:
Stem Cells. 31:808-822
Synchronous with massive shifts in reproductive hormones, the uterus and its lining the endometrium expand to accommodate a growing fetus during pregnancy. In the absence of an embryo the endometrium, composed of epithelium and stroma, undergoes nume
Autor:
Jesse C, Traller, Shawn J, Cokus, David A, Lopez, Olga, Gaidarenko, Sarah R, Smith, John P, McCrow, Sean D, Gallaher, Sheila, Podell, Michael, Thompson, Orna, Cook, Marco, Morselli, Artur, Jaroszewicz, Eric E, Allen, Andrew E, Allen, Sabeeha S, Merchant, Matteo, Pellegrini, Mark, Hildebrand
Publikováno v:
Biotechnology for Biofuels
Background Improvement in the performance of eukaryotic microalgae for biofuel and bioproduct production is largely dependent on characterization of metabolic mechanisms within the cell. The marine diatom Cyclotella cryptica, which was originally ide
Autor:
Mark Hildebrand, Matteo Pellegrini, John P. McCrow, Orna Cook, Shawn J. Cokus, Sheila Podell, Michael Thompson, Marco Morselli, David Adrian Lopez, Sean D. Gallaher, Olga Gaidarenko, Andrew E. Allen, Sarah R. Smith, Jesse C. Traller, Eric E. Allen, Sabeeha S. Merchant, Artur Jaroszewicz
Publikováno v:
Biotechnology for biofuels, vol 9, iss 1
BackgroundImprovement in the performance of eukaryotic microalgae for biofuel and bioproduct production is largely dependent on characterization of metabolic mechanisms within the cell. The marine diatom Cyclotella cryptica, which was originally iden
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e14eb84ed99de60197a91e17268debe0
https://escholarship.org/uc/item/1j66m4vs
https://escholarship.org/uc/item/1j66m4vs