Zobrazeno 1 - 10 of 105 pro vyhledávání: '"Arthur, Gruber"'
1
Akademický článek
Rational Design of Profile HMMs for Sensitive and Specific Sequence Detection with Case Studies Applied to Viruses, Bacteriophages, and Casposons
Autor: Liliane S. Oliveira, Alejandro Reyes, Bas E. Dutilh, Arthur Gruber
Publikováno v: Viruses, Vol 15, Iss 2, p 519 (2023)
Profile hidden Markov models (HMMs) are a powerful way of modeling biological sequence diversity and constitute a very sensitive approach to detecting divergent sequences. Here, we report the development of protocols for the rational design of profil
Externí odkaz: https://doaj.org/article/6ea8278ddac74c389a5349c06d103afc
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2
Akademický článek
Characterization of a Novel Mitovirus of the Sand Fly Lutzomyia longipalpis Using Genomic and Virus–Host Interaction Signatures
Autor: Paula Fonseca, Flavia Ferreira, Felipe da Silva, Liliane Santana Oliveira, João Trindade Marques, Aristóteles Goes-Neto, Eric Aguiar, Arthur Gruber
Publikováno v: Viruses, Vol 13, Iss 1, p 9 (2020)
Hematophagous insects act as the major reservoirs of infectious agents due to their intimate contact with a large variety of vertebrate hosts. Lutzomyia longipalpis is the main vector of Leishmania chagasi in the New World, but its role as a host of
Externí odkaz: https://doaj.org/article/97fbef7e79bb438db3cb69205855c672
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3
Characterization of a Novel Mitovirus of the Sand Fly Lutzomyia longipalpis Using Genomic and Virus–Host Interaction Signatures
Autor: Arthur Gruber, Paula Luize Camargos Fonseca, Aristóteles Góes-Neto, João Trindade Marques, Flávia Gomes Faleiro Ferreira, Felipe Ferreira da Silva, Liliane Santana Oliveira, Eric R.G.R. Aguiar
Publikováno v: Viruses, Vol 13, Iss 9, p 9 (2021)
Viruses
Volume 13
Issue 1
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Hematophagous insects act as the major reservoirs of infectious agents due to their intimate contact with a large variety of vertebrate hosts. Lutzomyia longipalpis is the main vector of Leishmania chagasi in the New World, but its role as a host of
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9565cd3338fdc2b4468d4db86f12d4b8
https://www.mdpi.com/1999-4915/13/1/9
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4
Rational Design of Profile Hidden Markov Models for Viral Classification and Discovery
Autor: Liliane Santana Oliveira, Arthur Gruber
Publikováno v: Bioinformatics ISBN: 9780645001716
This chapter provides an overview of the theoretical concepts and practical applications of methods for the rational design and application of profile hidden Markov models (profile HMMs) in viral discovery and classification. Profile HMMs are probabi
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::e53238124a711f9f054c510c9c0eff96
https://doi.org/10.36255/exonpublications.bioinformatics.2021.ch9
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5
Akademický článek
Trypanosoma cruzi defined antigens in the serological evaluation of an outbreak of acute Chagas disease in Brazil (Catolé do Rocha, Paraíba)
Autor: Eufrosina S Umezawa, Maria Aparecida Shikanai-Yasuda, Arthur Gruber, Vera L Pereira-Chioccola, Bianca Zingales
Publikováno v: Memorias do Instituto Oswaldo Cruz, Vol 91, Iss 1, Pp 87-93 (1996)
Immunoglobulin G and M humoral response to recombinant protein B13 and glycoconjugate LPPG Trypanosoma cruzi defined antigens was evaluated by ELISA in 18 patients in the acute phase of Chagas disease, who were contaminated on the same occasion. LPPG
Externí odkaz: https://doaj.org/article/f6dc28a56a4b4a24b227e9adf4c33b5a
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6
Uma abordagem integrada para a construção e utilização de HMMs de perfil para análises genômicas e metagenômicas
Autor: Liliane Santana Oliveira Kashiwabara, Arthur Gruber, Alan Mitchell Durham
Publikováno v: Biblioteca Digital de Teses e Dissertações da USP
Universidade de São Paulo (USP)
instacron:USP
HMMs de perfil são um método poderoso para modelar a diversidade de sequências biológicas e constituem uma abordagem muito sensível para a detecção de ortólogos remotos. Uma potencial aplicação de tais modelos é a detecção de vírus emer
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::17d4f8c52b68ca081e505ede20d8e41b
https://doi.org/10.11606/t.95.2019.tde-29082019-160757
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7
A single unidirectional piRNA cluster similar to the flamenco locus is the major source of EVE-derived transcription and small RNAs in Aedes aegypti mosquitoes
Autor: Liliane Santana Oliveira, Eric R.G.R. Aguiar, Lucio Rezende Queiroz, João Trindade Marques, Jean-Luc Imler, Arthur Gruber, Benjamin J. Matthews, Roenick P. Olmo, João Paulo Pereira de Almeida, Isaque João da Silva de Faria
Publikováno v: Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
RNA
RNA, Cold Spring Harbor Laboratory Press, 2020, pp.rna.073965.119. ⟨10.1261/rna.073965.119⟩
Endogenous viral elements (EVEs) are found in many eukaryotic genomes. Despite considerable knowledge about genomic elements such as transposons (TEs) and retroviruses, we still lack information about nonretroviral EVEs. Aedes aegypti mosquitoes have
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::53d94adb72e1071e47cb19271d6d3e9a
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9
A single unidirectional piRNA cluster similar to the
Autor: Eric Roberto Guimarães Rocha, Aguiar, João Paulo Pereira, de Almeida, Lucio Rezende, Queiroz, Liliane Santana, Oliveira, Roenick Proveti, Olmo, Isaque João da Silva, de Faria, Jean-Luc, Imler, Arthur, Gruber, Benjamin J, Matthews, João Trindade, Marques
Publikováno v: RNA
Endogenous viral elements (EVEs) are found in many eukaryotic genomes. Despite considerable knowledge about genomic elements such as transposons (TEs) and retroviruses, we still lack information about nonretroviral EVEs. Aedes aegypti mosquitoes have
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::99ce468636dff71108add61f772c335a
https://pubmed.ncbi.nlm.nih.gov/31996404
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10
Bioinformatics Meets Virology: The European Virus Bioinformatics Center's Second Annual Meeting
Autor: David Robertson, Mark P. Zwart, Bas E. Dutilh, Dino P. McMahon, François Enault, Brett E. Pickett, Ksenia Arkhipova, Philippe Lemey, Alexander Schönhuth, Anne Kupczok, Arthur Gruber, Bashar Ibrahim, Manja Marz, Richard H. Scheuermann, Susana Posada-Céspedes, Arno C. Andeweg, Eugene V. Koonin, Alexandra Zhernakova, Alice C. McHardy
Publikováno v: Viruses-Basel, 10(5):256. Multidisciplinary Digital Publishing Institute (MDPI)
Viruses
Viruses, MDPI, 2018, 10 (5), pp.256. ⟨10.3390/v10050256⟩
Viruses, 2018, 10 (5), pp.256. ⟨10.3390/v10050256⟩
Viruses, 10 (5)
Viruses, 10(5). Multidisciplinary Digital Publishing Institute (MDPI)
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Viruses, 10(5):256. Multidisciplinary Digital Publishing Institute (MDPI)
Viruses, 10(5):256
Viruses, 10(5):256. MDPI AG
International audience; The Second Annual Meeting of the European Virus Bioinformatics Center (EVBC), held in Utrecht, Netherlands, focused on computational approaches in virology, with topics including (but not limited to) virus discovery, diagnosti
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6d6f1930f160c2771c7056e38b81f06a
https://pure.eur.nl/en/publications/2b870483-9a78-418d-8968-a22da5d103ef
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