Zobrazeno 1 - 10
of 14
pro vyhledávání: '"Arron Shiffer"'
Autor:
Ahmed Bassiouni, Sathish Paramasivan, Arron Shiffer, Matthew R. Dillon, Emily K. Cope, Clare Cooksley, Mahnaz Ramezanpour, Sophia Moraitis, Mohammad Javed Ali, Benjamin S. Bleier, Claudio Callejas, Marjolein E. Cornet, Richard G. Douglas, Daniel Dutra, Christos Georgalas, Richard J. Harvey, Peter H. Hwang, Amber U. Luong, Rodney J. Schlosser, Pongsakorn Tantilipikorn, Marc A. Tewfik, Sarah Vreugde, Peter-John Wormald, J. Gregory Caporaso, Alkis J. Psaltis
Publikováno v:
Frontiers in Cellular and Infection Microbiology, Vol 10 (2020)
This study offers a novel description of the sinonasal microbiome, through an unsupervised machine learning approach combining dimensionality reduction and clustering. We apply our method to the International Sinonasal Microbiome Study (ISMS) dataset
Externí odkaz:
https://doaj.org/article/c1ec43843d2942b0b0a184511fea1d38
Autor:
Dierdra Bycura, Anthony C. Santos, Arron Shiffer, Shari Kyman, Kyle Winfree, Jay Sutliffe, Talima Pearson, Derek Sonderegger, Emily Cope, J. Gregory Caporaso
Publikováno v:
Sports, Vol 9, Iss 2, p 14 (2021)
In this study we examined changes to the human gut microbiome resulting from an eight-week intervention of either cardiorespiratory exercise (CRE) or resistance training exercise (RTE). Twenty-eight subjects (21 F; aged 18–26) were recruited for ou
Externí odkaz:
https://doaj.org/article/2beeacd249144525ae13edc48f0878a4
Autor:
Nicholas A. Bokulich, Jai Ram Rideout, William G. Mercurio, Arron Shiffer, Benjamin Wolfe, Corinne F. Maurice, Rachel J. Dutton, Peter J. Turnbaugh, Rob Knight, J. Gregory Caporaso
Publikováno v:
mSystems, Vol 1, Iss 5 (2016)
ABSTRACT Mock communities are an important tool for validating, optimizing, and comparing bioinformatics methods for microbial community analysis. We present mockrobiota, a public resource for sharing, validating, and documenting mock community data
Externí odkaz:
https://doaj.org/article/aa182d80d78440c2a9049d7390b83256
Autor:
Rodney J. Schlosser, J. Gregory Caporaso, Richard G. Douglas, Clare Cooksley, Emily K. Cope, Sophia Moraitis, Amber U Luong, Mohammad Javed Ali, Claudio Callejas, Marc A. Tewfik, Christos Georgalas, Arron Shiffer, Marjolein E. Cornet, Matthew R. Dillon, Peter-John Wormald, Richard J. Harvey, Mahnaz Ramezanpour, Sarah Vreugde, Alkis J. Psaltis, Peter H. Hwang, Sathish Paramasivan, Pongsakorn Tantilipikorn, Daniel Dutra, Ahmed Bassiouni, Benjamin S. Bleier
Publikováno v:
Frontiers in Cellular and Infection Microbiology, Vol 10 (2020)
Frontiers in Cellular and Infection Microbiology
Frontiers in Cellular and Infection Microbiology
This study offers a novel description of the sinonasal microbiome, through an unsupervised machine learning approach combining dimensionality reduction and clustering. We apply our method to the International Sinonasal Microbiome Study (ISMS) dataset
Autor:
Emily K. Cope, Shari Kyman, J. Gregory Caporaso, Jay T. Sutliffe, Arron Shiffer, Derek L. Sonderegger, Anthony C. Santos, Talima Pearson, Kyle N. Winfree, Dierdra Bycura
Publikováno v:
Sports
Volume 9
Issue 2
Sports, Vol 9, Iss 14, p 14 (2021)
Volume 9
Issue 2
Sports, Vol 9, Iss 14, p 14 (2021)
In this study we examined changes to the human gut microbiome resulting from an eight-week intervention of either cardiorespiratory exercise (CRE) or resistance training exercise (RTE). Twenty-eight subjects (21 F
aged 18&ndash
26) were rec
aged 18&ndash
26) were rec
Autor:
Daniel Dutra, Ahmed Bassiouni, Richard J. Harvey, Emily K. Cope, Rodney J. Schlosser, Marjolein E. Cornet, Richard G. Douglas, Christos Georgalas, Pongsakorn Tantilipikorn, Arron Shiffer, Sathish Paramasivan, J. Gregory Caporaso, Alkis J. Psaltis, Marc A. Tewfik, Sarah Vreugde, Mohammad Javed Ali, Peter H. Hwang, Benjamin S. Bleier, Claudio Callejas, Amber U Luong, Matthew R. Dillon, Peter-John Wormald, Clare Cooksley
This study offers a novel description of the sinonasal microbiome, through an unsupervised machine learning approach combining dimensionality reduction and clustering. We apply our method to the International Sinonasal Microbiome Study (ISMS) dataset
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ef57835948dfff5f1f6d1badf04d241a
https://doi.org/10.1101/549311
https://doi.org/10.1101/549311
Autor:
Daniel Dutra, Christos Georgalas, Clare Cooksley, Ahmed Bassiouni, J. Gregory Caporaso, Emily K. Cope, Claudio Callejas, Sophia Moraitis, Rodney J. Schlosser, Amber U Luong, Mahnaz Ramezanpour, Marjolein E. Cornet, Matthew R. Dillon, Arron Shiffer, Marc A. Tewfik, Peter-John Wormald, Sarah Vreugde, Richard J. Harvey, Peter H. Hwang, Benjamin S. Bleier, Mohammad Javed Ali, Pongsakorn Tantilipikorn, Sathish Paramasivan, Richard G. Douglas, Alkis J. Psaltis
The sinonasal microbiome remains poorly defined, with our current knowledge based on a few cohort studies whose findings are inconsistent. Furthermore, the variability of the sinus microbiome across geographical divides remains unexplored. We charact
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9469f2e685a199108e2dedf2b2b20622
https://doi.org/10.1101/548743
https://doi.org/10.1101/548743
Autor:
Fernando Vargas, Matthew R. Dillon, Stephanie B. Orchanian, Mary L. Preuss, Daniel McDonald, Christian C. Abnet, J. Gregory Caporaso, Alexey V. Melnik, Claire Duvallet, Massoud Maher, Max von Hippel, Colin J. Brislawn, Jamie Morton, Kyle C. Weber, Patrick Rosenthal, Qiyun Zhu, Lauren J. McIver, Talima Pearson, Clarisse Marotz, Madeleine Ernst, Ruth E. Ley, Jiarong Guo, Tomasz Kosciolek, Jorden Kreps, Benjamin D. Kaehler, Deanna L. Gibson, Yilong Zhang, Kestrel Gorlick, Catherine A. Lozupone, Nicholas A. Bokulich, Jessica L. Metcalf, Daniel M. Durall, Paul Keim, Daniel Petras, Elmar Pruesse, Dan Knights, Emily K. Cope, Gavin M. Douglas, Sean M. Gibbons, Hannes Holste, Austin D. Swafford, Yong-Xin Liu, Sabah Ul-Hasan, Joslynn S. Lee, Benjamin J. Callahan, Mehrbod Estaki, Zhenjiang Zech Xu, Jordan E. Bisanz, Jennifer Fouquier, Lingjing Jiang, Justin J. J. van der Hooft, Ahmad Turan Naimey, Michael S. Robeson, Harriet Alexander, Jesse R. Zaneveld, Andrés Mauricio Caraballo-Rodríguez, Gavin A. Huttley, Antonio Gonzalez, Curtis Huttenhower, Anupriya Tripathi, Pauline Trinh, Mingxun Wang, Emily Vogtmann, Susan Holmes, Yunhu Wan, Rashmi Sinha, Irina Koester, William A. Walters, Yang Bai, Kyo Bin Kang, Luke R. Thompson, Christian F. Edwardson, Ricardo Silva, Pedro J. Torres, Gabriel A. Al-Ghalith, Stefan Janssen, Kyle Bittinger, Manimozhiyan Arumugam, Jonathan Warren, Alan K. Jarmusch, Lasse Buur Rasmussen, Rob Knight, Se Jin Song, Michael Shaffer, Sydney C. Morgan, Bryan D Martin, Peter J. Turnbaugh, C. Titus Brown, Jose A. Navas-Molina, Morgan G. I. Langille, Christopher R. Keefe, Benjamin Hillmann, Eric J. Alm, Evan Bolyen, Arron Shiffer, Louis-Félix Nothias, Christian Diener, Nicola Segata, Francesco Asnicar, Charles H. D. Williamson, Samuel L. Peoples, Amy D. Willis, Pieter C. Dorrestein, Adam R. Rivers, John Chase, Scott T. Kelley, Julia M. Gauglitz, Yoshiki Vázquez-Baeza, John R. Spear, Jai Ram Rideout, Asker Daniel Brejnrod, Erikka Loftfield
Publikováno v:
Nature Biotechnology 37 (2019) 8
Nature Biotechnology
Nature Biotechnology, 37(8), 852-857
PMC
Nature Biotechnology
Nature Biotechnology, 37(8), 852-857
PMC
QIIME 2 development was primarily funded by NSF Awards 1565100 to J.G.C. and 1565057 to R.K. Partial support was also provided by the following: grants NIH U54CA143925 (J.G.C. and T.P.) and U54MD012388 (J.G.C. and T.P.); grants from the Alfred P. Slo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f54f79979681348f38899868524602c4
https://research.wur.nl/en/publications/reproducible-interactive-scalable-and-extensible-microbiome-data-
https://research.wur.nl/en/publications/reproducible-interactive-scalable-and-extensible-microbiome-data-
Autor:
Daniel Petras, Mehrbod Estaki, Kyle C. Weber, Yilong Zhang, Emily Vogtmann, Kestrel Gorlick, Eric J. Alm, Benjamin J. Callahan, Evan Bolyen, Alexey V. Melnik, Yang Bai, Gabriel A. Al-Ghalith, Louis-Félix Nothias, Elmar Pruesse, Massoud Maher, Zhenjiang Zech Xu, Gavin M. Douglas, Dan Knights, Stefan Janssen, Christopher R. Keefe, Jonathan Warren, Yong-Xin Liu, Chase Hd Williamson, Manimozhiyan Arumugam, Ii Michael S Robeson, Justin J. J. van der Hooft, Kyle Bittinger, Alan K. Jarmusch, Antonio Gonzalez, Sydney C. Morgan, Paul Keim, Stephanie B. Orchanian, Jessica L. Metcalf, Bryan D Martin, Jordan E. Bisanz, Andrés Mauricio Caraballo-Rodríguez, Curtis Huttenhower, Peter J. Turnbaugh, Arron Shiffer, Nicola Segata, Samuel L. Peoples, Hannes Holste, Ruth E. Ley, Rashmi Sinha, Ahmad Turan Naimey, Talima Pearson, Jose A. Navas-Molina, Francesco Asnicar, Michael Shaffer, Daniel McDonald, Gavin A. Huttley, Kyo Bin Kang, Jorden Kreps, Luke R. Thompson, Daniel M. Durall, Benjamin D. Kaehler, Anupriya Tripathi, Max von Hippel, Catherine A. Lozupone, Joslynn S. Lee, John Chase, Nicholas A. Bokulich, Colin J. Brislawn, Pauline Trinh, C. Titus Brown, Harriet Alexander, Matthew R. Dillon, Clarisse Marotz, Ricardo Silva, Jamie Morton, Morgan G. I. Langille, Mary L. Preuss, Deanna L. Gibson, Pieter C. Dorrestein, J. Gregory Caporaso, Pedro J. Torres, Yunhu Wan, Christian F. Edwardson, William A. Walters, Claire Duvallet, Benjamin Hillmann, Erikka Loftfield, Mingxun Wang, Fernando Vargas, Patrick Rosenthal, Susan Holmes, Se Jin Song, Madeleine Ernst, Irina Koester, Sabah Ul-Hasan, Lasse Buur Rasmussen, Rob Knight, Christian C. Abnet, Lauren J. McIver, Austin D. Swafford, Emily K. Cope, Lingjing Jiang, Jiarong Guo, Tomasz Kosciolek, Scott T. Kelley, Julia M. Gauglitz, Yoshiki Vázquez-Baeza, Amy D. Willis, Adam R. Rivers, Jennifer Fouquier, Jesse R. Zaneveld, John R. Spear, Jai Ram Rideout, Asker Daniel Brejnrod
We present QIIME 2, an open-source microbiome data science platform accessible to users spanning the microbiome research ecosystem, from scientists and engineers to clinicians and policy makers. QIIME 2 provides new features that will drive the next
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6118a03972a3417c42d7ccba4e06fd9f
https://doi.org/10.7287/peerj.preprints.27295v1
https://doi.org/10.7287/peerj.preprints.27295v1
Autor:
Evan Bolyen, Jai Ram Rideout, John Chase, T. Anders Pitman, Arron Shiffer, Willow Mercurio, Matthew R Dillon, J Gregory Caporaso
AnIntroduction toAppliedBioinformatics (or IAB) is afree, open source interactive textthat introduces readers to core concepts of bioinformatics in the context of their implementation and application. The archived version corresponds to the master br
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::782cbbdbae79c3fde34cc9e98ea84b4c