Zobrazeno 1 - 10
of 25
pro vyhledávání: '"Arrieta-Ortiz ML"'
An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network
Autor:
Arrieta-Ortiz, ML, Hafemeister, C, Bate, AR, Chu, T, Greenfield, A, Shuster, B, Barry, SN, Gallitto, M, Liu, B, Kacmarczyk, T, Santoriello, F, Chen, J, Rodrigues, CD, Sato, T, Rudner, DZ, Driks, A, Bonneau, R, Eichenberger, P
© 2015 The Authors. Published under the terms of the CC BY 4.0 license. Organisms from all domains of life use gene regulation networks to control cell growth, identity, function, and responses to environmental challenges. Although accurate global r
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______363::0d6992088f4f82c2cdafcef5519a7f15
https://hdl.handle.net/10453/117240
https://hdl.handle.net/10453/117240
Autor:
Gupta VK; Department of Bioengineering, Indian Institute of Science, CV Raman Road, Bengaluru, Karnataka, 560012, India., Vaishnavi VV; Department of Bioengineering, Indian Institute of Science, CV Raman Road, Bengaluru, Karnataka, 560012, India., Arrieta-Ortiz ML; Institute of Systems Biology, 401 Terry Ave N, Seattle, WA, 98109, USA., P S A; Department of Bioengineering, Indian Institute of Science, CV Raman Road, Bengaluru, Karnataka, 560012, India., K M J; Department of Electrical Communication Engineering, Indian Institute of Science, CV Raman Road, Bengaluru, Karnataka, 560012, India., Jeyasankar S; Department of Bioengineering, Indian Institute of Science, CV Raman Road, Bengaluru, Karnataka, 560012, India., Raghunathan V; Department of Electrical Communication Engineering, Indian Institute of Science, CV Raman Road, Bengaluru, Karnataka, 560012, India., Baliga NS; Institute of Systems Biology, 401 Terry Ave N, Seattle, WA, 98109, USA., Agarwal R; Department of Bioengineering, Indian Institute of Science, CV Raman Road, Bengaluru, Karnataka, 560012, India.
Publikováno v:
Advanced healthcare materials [Adv Healthc Mater] 2024 Apr 24, pp. e2304299. Date of Electronic Publication: 2024 Apr 24.
Autor:
Wang Y; Department of Microbiology, University of Washington, Seattle, WA 98109, USA., Gallagher LA; Department of Microbiology, University of Washington, Seattle, WA 98109, USA., Andrade PA; Department of Microbiology, University of Washington, Seattle, WA 98109, USA., Liu A; Department of Microbiology, University of Washington, Seattle, WA 98109, USA., Humphreys IR; Department of Biochemistry, University of Washington, Seattle, WA 98195, USA; Institute for Protein Design, University of Washington, Seattle, WA 98195, USA., Turkarslan S; Institute for Systems Biology, Seattle, WA 98109, USA., Cutler KJ; Department of Physics, University of Washington, Seattle, WA 98195, USA., Arrieta-Ortiz ML; Institute for Systems Biology, Seattle, WA 98109, USA., Li Y; Department of Microbiology, University of Washington, Seattle, WA 98109, USA; Institute for Systems Biology, Seattle, WA 98109, USA., Radey MC; Department of Microbiology, University of Washington, Seattle, WA 98109, USA., McLean JS; Department of Microbiology, University of Washington, Seattle, WA 98109, USA; Department of Periodontics, University of Washington, Seattle, WA 98195, USA., Cong Q; Eugene McDermott Center for Human Growth and Development, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Harold C. Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA., Baker D; Department of Biochemistry, University of Washington, Seattle, WA 98195, USA; Institute for Protein Design, University of Washington, Seattle, WA 98195, USA; Howard Hughes Medical Institute, University of Washington, Seattle, WA 98109, USA., Baliga NS; Institute for Systems Biology, Seattle, WA 98109, USA., Peterson SB; Department of Microbiology, University of Washington, Seattle, WA 98109, USA., Mougous JD; Department of Microbiology, University of Washington, Seattle, WA 98109, USA; Howard Hughes Medical Institute, University of Washington, Seattle, WA 98109, USA; Microbial Interactions and Microbiome Center, University of Washington, Seattle, WA 98195, USA. Electronic address: mougous@uw.edu.
Publikováno v:
Cell [Cell] 2023 Oct 26; Vol. 186 (22), pp. 4803-4817.e13. Date of Electronic Publication: 2023 Sep 07.
Autor:
Peterson EJR; Institute for Systems Biology, Seattle, WA 98109, USA. Electronic address: eliza.peterson@isbscience.org., Brooks AN; Institute for Systems Biology, Seattle, WA 98109, USA., Reiss DJ; Institute for Systems Biology, Seattle, WA 98109, USA., Kaur A; Institute for Systems Biology, Seattle, WA 98109, USA., Do J; Institute for Systems Biology, Seattle, WA 98109, USA., Pan M; Institute for Systems Biology, Seattle, WA 98109, USA., Wu WJ; Institute for Systems Biology, Seattle, WA 98109, USA., Morrison R; Laboratory of Malaria, Immunology and Vaccinology, National Institute of Allergy and Infectious Diseases, NIH, Bethesda, MD 20892, USA., Srinivas V; Institute for Systems Biology, Seattle, WA 98109, USA., Carter W; Institute for Systems Biology, Seattle, WA 98109, USA., Arrieta-Ortiz ML; Institute for Systems Biology, Seattle, WA 98109, USA., Ruiz RA; Institute for Systems Biology, Seattle, WA 98109, USA., Bhatt A; School of Biosciences and Institute of Microbiology and Infection, University of Birmingham, Birmingham B15 2TT, UK., Baliga NS; Institute for Systems Biology, Seattle, WA 98109, USA; Departments of Biology and Microbiology, University of Washington, Seattle, WA 98195, USA; Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA; Lawrence Berkeley National Lab, Berkeley, CA 94720, USA. Electronic address: nitin.baliga@isbscience.org.
Publikováno v:
Cell reports [Cell Rep] 2023 Aug 29; Vol. 42 (8), pp. 112875. Date of Electronic Publication: 2023 Aug 04.
Autor:
Wang Y; Department of Microbiology, University of Washington, Seattle, WA 98109, USA., Gallagher LA; Department of Microbiology, University of Washington, Seattle, WA 98109, USA., Andrade PA; Department of Microbiology, University of Washington, Seattle, WA 98109, USA., Liu A; Department of Microbiology, University of Washington, Seattle, WA 98109, USA., Humphreys IR; Department of Biochemistry, University of Washington, Seattle, WA 98109, USA.; Institute for Protein Design, Seattle, WA 98109, USA., Turkarslan S; Institute for Systems Biology, Seattle, WA 98109, USA., Cutler KJ; Department of Physics, University of Washington, Seattle, WA 98195, USA., Arrieta-Ortiz ML; Institute for Systems Biology, Seattle, WA 98109, USA., Li Y; Department of Microbiology, University of Washington, Seattle, WA 98109, USA.; Institute for Systems Biology, Seattle, WA 98109, USA., Radey MC; Department of Microbiology, University of Washington, Seattle, WA 98109, USA., McLean JS; Department of Microbiology, University of Washington, Seattle, WA 98109, USA.; Department of Periodontics, University of Washington, Seattle, WA 98195, USA., Cong Q; Eugene McDermott Center for Human Growth and Development, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Harold C. Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX, USA., Baker D; Department of Biochemistry, University of Washington, Seattle, WA 98109, USA.; Institute for Protein Design, Seattle, WA 98109, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA., Baliga NS; Institute for Systems Biology, Seattle, WA 98109, USA., Peterson SB; Department of Microbiology, University of Washington, Seattle, WA 98109, USA., Mougous JD; Department of Microbiology, University of Washington, Seattle, WA 98109, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA.; Microbial Interactions and Microbiome Center, University of Washington, Seattle, WA 98109, USA.
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2023 May 11. Date of Electronic Publication: 2023 May 11.
Autor:
Arrieta-Ortiz ML; Institute for Systems Biology, Seattle, Washington, USA., Pan M; Institute for Systems Biology, Seattle, Washington, USA., Kaur A; Institute for Systems Biology, Seattle, Washington, USA., Pepper-Tunick E; Institute for Systems Biology, Seattle, Washington, USA.; Molecular Engineering Sciences Institute, University of Washington, Seattle, Washington, USA., Srinivas V; Institute for Systems Biology, Seattle, Washington, USA., Dash A; Institute for Systems Biology, Seattle, Washington, USA., Immanuel SRC; Institute for Systems Biology, Seattle, Washington, USA., Brooks AN; Inscripta Inc, Boulder, Colorado, USA., Shepherd TR; Inscripta Inc, Boulder, Colorado, USA., Baliga NS; Institute for Systems Biology, Seattle, Washington, USA.; Molecular Engineering Sciences Institute, University of Washington, Seattle, Washington, USA.; Department of Biology, University of Washington, Seattle, Washington, USA.; Molecular and Cellular Biology Program, University of Washington, Seattle, Washington, USA.; Lawrence Berkeley National Lab, Berkeley, California, USA.; Department of Microbiology, University of Washington, Seattle Washington, USA.
Publikováno v:
MSystems [mSystems] 2023 Feb 23; Vol. 8 (1), pp. e0090422. Date of Electronic Publication: 2022 Dec 20.
Autor:
Pavao A; Massachusetts Host-Microbiome Center, Brigham & Women's Hospital, Boston, MA, USA., Graham M; Massachusetts Host-Microbiome Center, Brigham & Women's Hospital, Boston, MA, USA., Arrieta-Ortiz ML; Institute for Systems Biology, Seattle, WA, USA., Immanuel SRC; Institute for Systems Biology, Seattle, WA, USA., Baliga NS; Institute for Systems Biology, Seattle, WA, USA., Bry L; Massachusetts Host-Microbiome Center, Brigham & Women's Hospital, Boston, MA, USA; Department of Pathology, Harvard Medical School, Boston, MA, USA. Electronic address: lbry@bwh.harvard.edu.
Publikováno v:
Anaerobe [Anaerobe] 2022 Aug; Vol. 76, pp. 102600. Date of Electronic Publication: 2022 Jun 13.
Autor:
Xavier JB; Program for Computational and Systems Biology, Memorial Sloan-Kettering Cancer Center, New York, NY, USA., Monk JM; Department of Bioengineering, UC San Diego, San Diego, CA, USA., Poudel S; Department of Bioengineering, UC San Diego, San Diego, CA, USA., Norsigian CJ; Department of Bioengineering, UC San Diego, San Diego, CA, USA., Sastry AV; Department of Bioengineering, UC San Diego, San Diego, CA, USA., Liao C; Program for Computational and Systems Biology, Memorial Sloan-Kettering Cancer Center, New York, NY, USA., Bento J; Computer Science Department, Boston College, Chestnut Hill, MA, USA., Suchard MA; Department of Computational Medicine, David Geffen School of Medicine at UCLA, University of California, Los Angeles, CA, USA., Arrieta-Ortiz ML; Institute for Systems Biology, Seattle, WA, USA., Peterson EJR; Institute for Systems Biology, Seattle, WA, USA., Baliga NS; Institute for Systems Biology, Seattle, WA, USA., Stoeger T; Department of Chemical and Biological Engineering; Northwestern University, Evanston, IL 60208, USA.; Successful Clinical Response in Pneumonia Therapy (SCRIPT) Systems Biology Center, Northwestern University, Chicago, IL, USA., Ruffin F; Division of Infectious Diseases, Department of Medicine, Duke University School of Medicine, Durham, NC, USA., Richardson RAK; Department of Chemical and Biological Engineering; Northwestern University, Evanston, IL 60208, USA.; Successful Clinical Response in Pneumonia Therapy (SCRIPT) Systems Biology Center, Northwestern University, Chicago, IL, USA., Gao CA; Successful Clinical Response in Pneumonia Therapy (SCRIPT) Systems Biology Center, Northwestern University, Chicago, IL, USA.; Division of Pulmonary and Critical Care, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA., Horvath TD; Department of Pathology and Immunology, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Pathology, Texas Children's Microbiome Center, Texas Children's Hospital, Houston, TX 77030, USA., Haag AM; Department of Pathology and Immunology, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Pathology, Texas Children's Microbiome Center, Texas Children's Hospital, Houston, TX 77030, USA., Wu Q; Department of Pathology and Immunology, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Pathology, Texas Children's Microbiome Center, Texas Children's Hospital, Houston, TX 77030, USA., Savidge T; Department of Pathology and Immunology, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Pathology, Texas Children's Microbiome Center, Texas Children's Hospital, Houston, TX 77030, USA., Yeaman MR; David Geffen School of Medicine at UCLA & Lundquist Institute for Infection & Immunity at Harbor UCLA Medical Center, Los Angeles, CA, USA.
Publikováno v:
IScience [iScience] 2022 Mar 15; Vol. 25 (4), pp. 104079. Date of Electronic Publication: 2022 Mar 15 (Print Publication: 2022).
Autor:
Immanuel SRC; Institute for Systems Biology, Seattle, WA, USA., Arrieta-Ortiz ML; Institute for Systems Biology, Seattle, WA, USA., Ruiz RA; Institute for Systems Biology, Seattle, WA, USA., Pan M; Institute for Systems Biology, Seattle, WA, USA., Lopez Garcia de Lomana A; Institute for Systems Biology, Seattle, WA, USA.; Center for Systems Biology, University of Iceland, Reykjavik, Iceland., Peterson EJR; Institute for Systems Biology, Seattle, WA, USA. eliza.peterson@isbscience.org., Baliga NS; Institute for Systems Biology, Seattle, WA, USA. nitin.baliga@isbscience.org.; Departments of Biology and Microbiology, University of Washington, Seattle, WA, USA. nitin.baliga@isbscience.org.; Molecular and Cellular Biology Program, University of Washington, Seattle, WA, USA. nitin.baliga@isbscience.org.; Lawrence Berkeley National Lab, Berkeley, CA, USA. nitin.baliga@isbscience.org.
Publikováno v:
NPJ systems biology and applications [NPJ Syst Biol Appl] 2021 Dec 06; Vol. 7 (1), pp. 43. Date of Electronic Publication: 2021 Dec 06.
Autor:
Girinathan BP; Massachusetts Host-Microbiome Center, Brigham & Women's Hospital, Harvard Medical School, Boston, MA 02115, USA., DiBenedetto N; Massachusetts Host-Microbiome Center, Brigham & Women's Hospital, Harvard Medical School, Boston, MA 02115, USA., Worley JN; Massachusetts Host-Microbiome Center, Brigham & Women's Hospital, Harvard Medical School, Boston, MA 02115, USA; National Center of Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA., Peltier J; Laboratoire Pathogenèse des Bactéries Anaérobies, Institut Pasteur, UMR CNRS 2001, Université de Paris, 25-28 Rue du Dr. Roux, Institut Pasteur, 75015 Paris Cedex, France; Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Saclay, 91198, Gif-sur-yvette Cedex, France., Arrieta-Ortiz ML; Institute for Systems Biology, Seattle, WA 98109, USA., Immanuel SRC; Institute for Systems Biology, Seattle, WA 98109, USA., Lavin R; Massachusetts Host-Microbiome Center, Brigham & Women's Hospital, Harvard Medical School, Boston, MA 02115, USA., Delaney ML; Massachusetts Host-Microbiome Center, Brigham & Women's Hospital, Harvard Medical School, Boston, MA 02115, USA; Clinical Microbiology Laboratory, Department of Pathology, Brigham & Women's Hospital, Boston, MA 02115, USA., Cummins CK; Massachusetts Host-Microbiome Center, Brigham & Women's Hospital, Harvard Medical School, Boston, MA 02115, USA., Hoffman M; Center for Food Safety and Applied Nutrition, United States Food and Drug Administration, Department of Microbiology, College Park, MD 20740, USA., Luo Y; Center for Food Safety and Applied Nutrition, United States Food and Drug Administration, Department of Microbiology, College Park, MD 20740, USA., Gonzalez-Escalona N; Center for Food Safety and Applied Nutrition, United States Food and Drug Administration, Department of Microbiology, College Park, MD 20740, USA., Allard M; Center for Food Safety and Applied Nutrition, United States Food and Drug Administration, Department of Microbiology, College Park, MD 20740, USA., Onderdonk AB; Massachusetts Host-Microbiome Center, Brigham & Women's Hospital, Harvard Medical School, Boston, MA 02115, USA; Clinical Microbiology Laboratory, Department of Pathology, Brigham & Women's Hospital, Boston, MA 02115, USA., Gerber GK; Massachusetts Host-Microbiome Center, Brigham & Women's Hospital, Harvard Medical School, Boston, MA 02115, USA; Harvard-MIT Health Sciences & Technology, Cambridge, MA 02139, USA., Sonenshein AL; Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA 02111, USA., Baliga NS; Institute for Systems Biology, Seattle, WA 98109, USA., Dupuy B; Laboratoire Pathogenèse des Bactéries Anaérobies, Institut Pasteur, UMR CNRS 2001, Université de Paris, 25-28 Rue du Dr. Roux, Institut Pasteur, 75015 Paris Cedex, France., Bry L; Massachusetts Host-Microbiome Center, Brigham & Women's Hospital, Harvard Medical School, Boston, MA 02115, USA; Clinical Microbiology Laboratory, Department of Pathology, Brigham & Women's Hospital, Boston, MA 02115, USA. Electronic address: lbry@bwh.harvard.edu.
Publikováno v:
Cell host & microbe [Cell Host Microbe] 2021 Nov 10; Vol. 29 (11), pp. 1693-1708.e7. Date of Electronic Publication: 2021 Oct 11.