Zobrazeno 1 - 10
of 66
pro vyhledávání: '"Aron Marchler-Bauer"'
Publikováno v:
BMC Genomics, Vol 24, Iss 1, Pp 1-14 (2023)
Abstract Comparative genomics is the comparison of genetic information within and across organisms to understand the evolution, structure, and function of genes, proteins, and non-coding regions (Sivashankari and Shanmughavel, Bioinformation 1:376-8,
Externí odkaz:
https://doaj.org/article/fa743f48db74490abbf1abca15952ab2
Autor:
Jiyao Wang, Philippe Youkharibache, Aron Marchler-Bauer, Christopher Lanczycki, Dachuan Zhang, Shennan Lu, Thomas Madej, Gabriele H. Marchler, Tiejun Cheng, Li Chuin Chong, Sarah Zhao, Kevin Yang, Jack Lin, Zhiyu Cheng, Rachel Dunn, Sridhar Acharya Malkaram, Chin-Hsien Tai, David Enoma, Ben Busby, Nicholas L. Johnson, Francesco Tabaro, Guangfeng Song, Yuchen Ge
Publikováno v:
Frontiers in Molecular Biosciences, Vol 9 (2022)
iCn3D was initially developed as a web-based 3D molecular viewer. It then evolved from visualization into a full-featured interactive structural analysis software. It became a collaborative research instrument through the sharing of permanent, shorte
Externí odkaz:
https://doaj.org/article/d5688f6755434832b02f6357c8fbb4eb
Autor:
Typhaine Paysan-Lafosse, Matthias Blum, Sara Chuguransky, Tiago Grego, Beatriz Lázaro Pinto, Gustavo A Salazar, Maxwell L Bileschi, Peer Bork, Alan Bridge, Lucy Colwell, Julian Gough, Daniel H Haft, Ivica Letunić, Aron Marchler-Bauer, Huaiyu Mi, Darren A Natale, Christine A Orengo, Arun P Pandurangan, Catherine Rivoire, Christian J A Sigrist, Ian Sillitoe, Narmada Thanki, Paul D Thomas, Silvio C E Tosatto, Cathy H Wu, Alex Bateman
Publikováno v:
Nucleic Acids Research. 51:D418-D427
The InterPro database (https://www.ebi.ac.uk/interpro/) provides an integrative classification of protein sequences into families, and identifies functionally important domains and conserved sites. Here, we report recent developments with InterPro (v
Autor:
Eric W Sayers, Evan E Bolton, J Rodney Brister, Kathi Canese, Jessica Chan, Donald C Comeau, Ryan Connor, Kathryn Funk, Chris Kelly, Sunghwan Kim, Tom Madej, Aron Marchler-Bauer, Christopher Lanczycki, Stacy Lathrop, Zhiyong Lu, Francoise Thibaud-Nissen, Terence Murphy, Lon Phan, Yuri Skripchenko, Tony Tse, Jiyao Wang, Rebecca Williams, Barton W Trawick, Kim D Pruitt, Stephen T Sherry
Publikováno v:
Nucleic Acids Res
The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBank® nucleic acid sequence database and the PubMed® database of citations and abstracts publi
Autor:
Eric W Sayers, Evan E Bolton, J Rodney Brister, Kathi Canese, Jessica Chan, Donald C Comeau, Catherine M Farrell, Michael Feldgarden, Anna M Fine, Kathryn Funk, Eneida Hatcher, Sivakumar Kannan, Christopher Kelly, Sunghwan Kim, William Klimke, Melissa J Landrum, Stacy Lathrop, Zhiyong Lu, Thomas L Madden, Adriana Malheiro, Aron Marchler-Bauer, Terence D Murphy, Lon Phan, Shashikant Pujar, Sanjida H Rangwala, Valerie A Schneider, Tony Tse, Jiyao Wang, Jian Ye, Barton W Trawick, Kim D Pruitt, Stephen T Sherry
Publikováno v:
Nucleic Acids Res
The National Center for Biotechnology Information (NCBI) provides online information resources for biology, including the GenBank® nucleic acid sequence database and the PubMed® database of citations and abstracts published in life science journals
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a57078e0f67eb3b452a111fba83e1926
https://europepmc.org/articles/PMC9825438/
https://europepmc.org/articles/PMC9825438/
Autor:
Jiyao Wang, Farideh Chitsaz, Myra K Derbyshire, Noreen R Gonzales, Marc Gwadz, Shennan Lu, Gabriele H Marchler, James S Song, Narmada Thanki, Roxanne A Yamashita, Mingzhang Yang, Dachuan Zhang, Chanjuan Zheng, Christopher J Lanczycki, Aron Marchler-Bauer
Publikováno v:
Nucleic Acids Res
NLM’s conserved domain database (CDD) is a collection of protein domain and protein family models constructed as multiple sequence alignments. Its main purpose is to provide annotation for protein and translated nucleotide sequences with the locati
Autor:
Valérie de Crécy-lagard, Rocio Amorin de Hegedus, Cecilia Arighi, Jill Babor, Alex Bateman, Ian Blaby, Crysten Blaby-Haas, Alan J Bridge, Stephen K Burley, Stacey Cleveland, Lucy J Colwell, Ana Conesa, Christian Dallago, Antoine Danchin, Anita de Waard, Adam Deutschbauer, Raquel Dias, Yousong Ding, Gang Fang, Iddo Friedberg, John Gerlt, Joshua Goldford, Mark Gorelik, Benjamin M Gyori, Christopher Henry, Geoffrey Hutinet, Marshall Jaroch, Peter D Karp, Liudmyla Kondratova, Zhiyong Lu, Aron Marchler-Bauer, Maria-Jesus Martin, Claire McWhite, Gaurav D Moghe, Paul Monaghan, Anne Morgat, Christopher J Mungall, Darren A Natale, William C Nelson, Seán O’Donoghue, Christine Orengo, Katherine H O’Toole, Predrag Radivojac, Colbie Reed, Richard J Roberts, Dmitri Rodionov, Irina A Rodionova, Jeffrey D Rudolf, Lana Saleh, Gloria Sheynkman, Francoise Thibaud-Nissen, Paul D Thomas, Peter Uetz, David Vallenet, Erica Watson Carter, Peter R Weigele, Valerie Wood, Elisha M Wood-Charlson, Jin Xu
Valérie de Crécy-Lagard: et al.
Over the last 25 years, biology has entered the genomic era and is becoming a science of 'big data'. Most interpretations of genomic analyses rely on accurate functional annotations of the proteins encoded by mo
Over the last 25 years, biology has entered the genomic era and is becoming a science of 'big data'. Most interpretations of genomic analyses rely on accurate functional annotations of the proteins encoded by mo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::92bc0c0dc223190e4e256e36b3167003
Autor:
Michiel J.M. Niesen, Karthik Murugadoss, Patrick J. Lenehan, Aron Marchler-Bauer, Jiyao Wang, Ryan Connor, J. Rodney Brister, AJ Venkatakrishnan, Venky Soundararajan
Publikováno v:
PNAS Nexus. 1
The COVID-19 pandemic has seen the persistent emergence of immune-evasive SARS-CoV-2 variants under the selection pressure of natural and vaccination-acquired immunity. However, it is currently challenging to quantify how immunologically distinct a n
Autor:
Farideh Chitsaz, Narmada Thanki, A Scott Durkin, Azat Badretdin, Jiyao Wang, Wenjun Li, Marc Gwadz, James S. Song, George Coulouris, Françoise Thibaud-Nissen, Kathleen R O’Neill, Michael DiCuccio, Aron Marchler-Bauer, Christopher J. Lanczycki, Noreen R. Gonzales, Mingzhang Yang, Chanjuan Zheng, Vyacheslav Chetvernin, Daniel H. Haft, Myra K. Derbyshire, Roxanne A. Yamashita
Publikováno v:
Nucleic Acids Res
The Reference Sequence (RefSeq) project at the National Center for Biotechnology Information (NCBI) contains nearly 200 000 bacterial and archaeal genomes and 150 million proteins with up-to-date annotation. Changes in the Prokaryotic Genome Annotati
Autor:
Jiyao Wang, Thomas Madej, Philippe Youkharibache, Dachuan Zhang, Christopher Lanczycki, Shennan Lu, Gabriele Marchler, Mingzhang Yang, Aron Marchler-Bauer
Publikováno v:
Journal of Biological Chemistry. 299:103422