Zobrazeno 1 - 10 of 63 pro vyhledávání: '"Arnaud, Lemainque"'
1
Akademický článek
Genome-wide mapping of individual replication fork velocities using nanopore sequencing
Autor: Bertrand Theulot, Laurent Lacroix, Jean-Michel Arbona, Gael A. Millot, Etienne Jean, Corinne Cruaud, Jade Pellet, Florence Proux, Magali Hennion, Stefan Engelen, Arnaud Lemainque, Benjamin Audit, Olivier Hyrien, Benoît Le Tallec
Publikováno v: Nature Communications, Vol 13, Iss 1, Pp 1-14 (2022)
Theulot et al. introduce NanoForkSpeed, a nanopore sequencing-based method to map individual replication fork velocities on entire genomes. NFS shows that fork speed is uniform across yeast chromosomes except for a marked slowdown at pausing sites.
Externí odkaz: https://doaj.org/article/b8e2f80d57284f0b8386e98104ca5aad
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2
Akademický článek
Lifespan prolonging mechanisms and insulin upregulation without fat accumulation in long-lived reproductives of a higher termite
Autor: Sarah Séité, Mark C. Harrison, David Sillam-Dussès, Roland Lupoli, Tom J. M. Van Dooren, Alain Robert, Laure-Anne Poissonnier, Arnaud Lemainque, David Renault, Sébastien Acket, Muriel Andrieu, José Viscarra, Hei Sook Sul, Z. Wilhelm de Beer, Erich Bornberg-Bauer, Mireille Vasseur-Cognet
Publikováno v: Communications Biology, Vol 5, Iss 1, Pp 1-16 (2022)
Séité, Harrison, et al. investigate the mechanisms underlying long lifespan in queens and kings of the highly social termite Macrotermes natalensis. Using transcriptomics, lipidomics and metabolomics, this study shows that several aging-related pro
Externí odkaz: https://doaj.org/article/b08c6c5bde544ce89bcde867e5dcd68a
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3
Akademický článek
Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing
Autor: Caroline Belser, Franc-Christophe Baurens, Benjamin Noel, Guillaume Martin, Corinne Cruaud, Benjamin Istace, Nabila Yahiaoui, Karine Labadie, Eva Hřibová, Jaroslav Doležel, Arnaud Lemainque, Patrick Wincker, Angélique D’Hont, Jean-Marc Aury
Publikováno v: Communications Biology, Vol 4, Iss 1, Pp 1-12 (2021)
Belser, Baurens et al. report a chromosome-scale assembly of a banana genome (Musa acuminata) with five out of eleven chromosomes entirely reconstructed in a single contig from telomere to telomere. This work sheds light on the content of complex reg
Externí odkaz: https://doaj.org/article/97294fd2ae1d49798e6a32e3557e19b1
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4
Akademický článek
Meiotic Behaviors of Allotetraploid Citrus Drive the Interspecific Recombination Landscape, the Genetic Structures, and Traits Inheritance in Tetrazyg Progenies Aiming to Select New Rootstocks
Autor: Lény Calvez, Alexis Dereeper, Aude Perdereau, Pierre Mournet, Maëva Miranda, Saturnin Bruyère, Barbara Hufnagel, Yann Froelicher, Arnaud Lemainque, Raphaël Morillon, Patrick Ollitrault
Publikováno v: Plants, Vol 12, Iss 8, p 1630 (2023)
Sexual breeding at the tetraploid level is a promising strategy for rootstock breeding in citrus. Due to the interspecific origin of most of the conventional diploid citrus rootstocks that produced the tetraploid germplasm, the optimization of this s
Externí odkaz: https://doaj.org/article/61b2510c9a86490b9bccda0b487f0db6
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5
Akademický článek
FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing
Autor: Magali Hennion, Jean-Michel Arbona, Laurent Lacroix, Corinne Cruaud, Bertrand Theulot, Benoît Le Tallec, Florence Proux, Xia Wu, Elizaveta Novikova, Stefan Engelen, Arnaud Lemainque, Benjamin Audit, Olivier Hyrien
Publikováno v: Genome Biology, Vol 21, Iss 1, Pp 1-25 (2020)
Abstract Genome replication mapping methods profile cell populations, masking cell-to-cell heterogeneity. Here, we describe FORK-seq, a nanopore sequencing method to map replication of single DNA molecules at 200-nucleotide resolution. By quantifying
Externí odkaz: https://doaj.org/article/207b69b66bc4499fb532f23fff185faf
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6
Akademický článek
High-Quality de Novo Genome Assembly of the Dekkera bruxellensis Yeast Using Nanopore MinION Sequencing
Autor: Téo Fournier, Jean-Sébastien Gounot, Kelle Freel, Corinne Cruaud, Arnaud Lemainque, Jean-Marc Aury, Patrick Wincker, Joseph Schacherer, Anne Friedrich
Publikováno v: G3: Genes, Genomes, Genetics, Vol 7, Iss 10, Pp 3243-3250 (2017)
Genetic variation in natural populations represents the raw material for phenotypic diversity. Species-wide characterization of genetic variants is crucial to have a deeper insight into the genotype-phenotype relationship. With the advent of new sequ
Externí odkaz: https://doaj.org/article/f5eb8f4a820d4787b034aef493e745a3
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7
Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing
Autor: Eva Hřibová, Angélique D'Hont, Patrick Wincker, Franc-Christophe Baurens, Arnaud Lemainque, Benjamin Noel, Corinne Cruaud, Jean-Marc Aury, Caroline Belser, Guillaume Martin, Jaroslav Doležel, Nabila Yahiaoui, Benjamin Istace, Karine Labadie
Publikováno v: Communications Biology, Vol 4, Iss 1, Pp 1-12 (2021)
Communications Biology
Communications Biology, Nature Publishing Group, 2021, 4 (1), ⟨10.1038/s42003-021-02559-3⟩
Communications Biology, 2021, 4 (1), ⟨10.1038/s42003-021-02559-3⟩
Long-read technologies hold the promise to obtain more complete genome assemblies and to make them easier. Coupled with long-range technologies, they can reveal the architecture of complex regions, like centromeres or rDNA clusters. These technologie
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::efe2f376fe49c86c085e9687e40e75ae
https://doaj.org/article/97294fd2ae1d49798e6a32e3557e19b1
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8
Lifespan prolonging mechanisms and insulin upregulation without fat accumulation in long-lived reproductives of a higher termite
Autor: Roland Lupoli, Erich Bornberg-Bauer, Hei Sook Sul, Mark C Harrison, Sarah Séité, Jose A. Viscarra, Z. Wilhelm de Beer, Mireille Vasseur-Cognet, David Sillam-Dussès, Arnaud Lemainque, Tom J. M. Van Dooren, Sébastien Acket, Alain Robert, Laure-Anne Poissonnier, David Renault, Muriel Andrieu
Publikováno v: Communications Biology, Vol 5, Iss 1, Pp 1-16 (2022)
Communications Biology
Communications Biology, 2022, 5, pp.44. ⟨10.1101/2021.05.10.443390⟩
Communications Biology, 2022, 5 (5), pp.44. ⟨10.1101/2021.05.10.443390⟩
Communications Biology, 2022, 5 (1), pp.44. ⟨10.1038/s42003-021-02974-6⟩
Kings and queens of eusocial termites can live for decades, while queens sustain a nearly maximal fertility. To investigate the molecular mechanisms underlying their long lifespan, we carried out transcriptomics, lipidomics and metabolomics in Macrot
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f50c6ab00af6a5ce459604a9791c3ac1
https://hal.archives-ouvertes.fr/hal-03448746
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10
FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing
Autor: Elizaveta A. Novikova, Corinne Cruaud, Arnaud Lemainque, Benoît Le Tallec, Stefan Engelen, Laurent Lacroix, Olivier Hyrien, Bertrand Theulot, Benjamin Audit, Magali Hennion, Xia Wu, Jean-Michel Arbona, Florence Proux
Publikováno v: Genome Biology
Genome Biology, 2020, 21, ⟨10.1186/s13059-020-02013-3⟩
Genome Biology, BioMed Central, 2020, 21 (1), ⟨10.1186/s13059-020-02013-3⟩
Genome Biology, BioMed Central, 2020, 21, pp.125. ⟨10.1186/s13059-020-02013-3⟩
Genome Biology, Vol 21, Iss 1, Pp 1-25 (2020)
Genome Biology, BioMed Central, 2020, 21, ⟨10.1186/s13059-020-02013-3⟩
Genome Biology, 2020, 21, pp.125. ⟨10.1186/s13059-020-02013-3⟩
Genome replication mapping methods profile cell populations, masking cell-to-cell heterogeneity. Here, we describe FORK-seq, a nanopore sequencing method to map replication of single DNA molecules at 200 nucleotide resolution. By quantifying BrdU inc
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d991b712969cd41f141ed758685a89ff
https://hal.science/hal-03055281/file/s13059-020-02013-3.pdf
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