Erratum: The JBEI quantitative metabolic modeling library (jQMM): A python library for modeling microbial metabolism[BMC Bioinformatics,18 (2017),(1)]DOI:10.1186/s12859-017-1615-y

Autor: Birkel, GW, Ghosh, A, Kumar, VS, Weaver, D, Ando, D, Backman, TWH, Arkin, AP, Keasling, JD, Martín, HG

Publikováno v: Birkel, GW; Ghosh, A; Kumar, VS; Weaver, D; Ando, D; Backman, TWH; et al.(2017). Erratum: The JBEI quantitative metabolic modeling library (jQMM): A python library for modeling microbial metabolism[BMC Bioinformatics,18 (2017),(1)]DOI:10.1186/s12859-017-1615-y. BMC Bioinformatics, 18(1), 219. doi: 10.1186/s12859-017-1631-y. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/4g10x0gv

Following publication of this article [1], it has come to our attention that an incomplete version of Fig. 7 was included in this article. The complete figure is shown below with the missing text included to the left of the chart.

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Complete genome sequence of Pseudomonas stutzeri strain RCH2 isolated from a Hexavalent Chromium [Cr(VI)] contaminated site

Autor: Chakraborty, R, Woo, H, Dehal, P, Walker, R, Zemla, M, Auer, M, Goodwin, LA, Kazakov, A, Novichkov, P, Arkin, AP, Hazen, TC

Publikováno v: Chakraborty, R; Woo, H; Dehal, P; Walker, R; Zemla, M; Auer, M; et al.(2017). Complete genome sequence of Pseudomonas stutzeri strain RCH2 isolated from a Hexavalent Chromium [Cr(VI)] contaminated site. Standards in Genomic Sciences, 12(1). doi: 10.1186/s40793-017-0233-7. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/10n4f0k1

© 2017 The Author(s). Hexavalent Chromium [Cr(VI)] is a widespread contaminant found in soil, sediment, and ground water in several DOE sites, including Hanford 100 H area. In order to stimulate microbially mediated reduction of Cr(VI) at this site,

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Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris

Autor: Zhou, A, Hillesland, KL, He, Z, Schackwitz, W, Tu, Q, Zane, GM, Ma, Q, Qu, Y, Stahl, DA, Wall, JD, Hazen, TC, Fields, MW, Arkin, AP, Zhou, J

Publikováno v: The ISME journal, vol 9, iss 11
Zhou, A; Hillesland, KL; He, Z; Schackwitz, W; Tu, Q; Zane, GM; et al.(2015). Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris. ISME Journal, 9(11), 2360-2372. doi: 10.1038/ismej.2015.45. UC Berkeley: Retrieved from: http://www.escholarship.org/uc/item/90g9t37j

© 2015 International Society for Microbial Ecology. To investigate the genetic basis of microbial evolutionary adaptation to salt (NaCl) stress, populations of Desulfovibrio vulgaris Hildenborough (DvH), a sulfate-reducing bacterium important for th

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Monofluorophosphate is a selective inhibitor of respiratory sulfate-reducing microorganisms

Autor: Carlson, HK, Stoeva, MK, Justice, NB, Sczesnak, A, Mullan, MR, Mosqueda, LA, Kuehl, JV, Deutschbauer, AM, Arkin, AP, Coates, JD

Publikováno v: Environmental science & technology, vol 49, iss 6
Carlson, HK; Stoeva, MK; Justice, NB; Sczesnak, A; Mullan, MR; Mosqueda, LA; et al.(2015). Monofluorophosphate is a selective inhibitor of respiratory sulfate-reducing microorganisms. Environmental Science and Technology, 49(6), 3727-3736. doi: 10.1021/es505843z. UC Berkeley: Retrieved from: http://www.escholarship.org/uc/item/4xk4088t

© 2015 American Chemical Society. Despite the environmental and economic cost of microbial sulfidogenesis in industrial operations, few compounds are known as selective inhibitors of respiratory sulfate reducing microorganisms (SRM), and no study ha

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The energy-conserving electron transfer system used by Desulfovibrio alaskensis strain G20 during pyruvate fermentation involves reduction of endogenously formed fumarate and cytoplasmic and membrane-bound complexes, Hdr-Flox and Rnf

Autor: Meyer, B, Kuehl, JV, Price, MN, Ray, J, Deutschbauer, AM, Arkin, AP, Stahl, DA

Publikováno v: Environmental microbiology, vol 16, iss 11
Meyer, B; Kuehl, JV; Price, MN; Ray, J; Deutschbauer, AM; Arkin, AP; et al.(2014). The energy-conserving electron transfer system used by Desulfovibrio alaskensis strain G20 during pyruvate fermentation involves reduction of endogenously formed fumarate and cytoplasmic and membrane-bound complexes, Hdr-Flox and Rnf. Environmental Microbiology, 16(11), 3463-3486. doi: 10.1111/1462-2920.12405. UC Berkeley: Retrieved from: http://www.escholarship.org/uc/item/2xt089bz

© 2014 Society for Applied Microbiology and John Wiley & Sons Ltd. The adaptation capability of Desulfovibrio to natural fluctuations in electron acceptor availability was evaluated by studying Desulfovibrio alaskensis strain G20 under varying respi

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