Zobrazeno 1 - 10
of 39
pro vyhledávání: '"Arkadiy I Garber"'
Publikováno v:
PLoS Biology, Vol 22, Iss 4, p e3002577 (2024)
The move from a free-living environment to a long-term residence inside a host eukaryotic cell has profound effects on bacterial function. While endosymbioses are found in many eukaryotes, from protists to plants to animals, the bacteria that form th
Externí odkaz:
https://doaj.org/article/4f2803a95d434dbb922197c1567394b5
Autor:
Gustavo A. Ramírez, Rinat Bar-Shalom, Andrea Furlan, Roberto Romeo, Michelle Gavagnin, Gianluca Calabrese, Arkadiy I. Garber, Laura Steindler
Publikováno v:
Microbiome, Vol 11, Iss 1, Pp 1-15 (2023)
Abstract Background Methanotrophy by the sponge-hosted microbiome has been mainly reported in the ecological context of deep-sea hydrocarbon seep niches where methane is either produced geothermically or via anaerobic methanogenic archaea inhabiting
Externí odkaz:
https://doaj.org/article/da2c66fe84d1427eb5c6863ee512485d
Autor:
Arkadiy I. Garber, Catherine R. Armbruster, Stella E. Lee, Vaughn S. Cooper, Jennifer M. Bomberger, Sean M. McAllister
Publikováno v:
BMC Genomics, Vol 23, Iss 1, Pp 1-8 (2022)
Abstract Background Shotgun sequencing of cultured microbial isolates/individual eukaryotes (whole-genome sequencing) and microbial communities (metagenomics) has become commonplace in biology. Very often, sequenced samples encompass organisms spanni
Externí odkaz:
https://doaj.org/article/b5aeb50b31474617a6706f52463a9bd8
Autor:
Gustavo Antonio Ramírez, Jitendra Keshri, Isabella Vahrson, Arkadiy I. Garber, Mark E. Berrang, Nelson A. Cox, Fernando González-Cerón, Samuel E. Aggrey, Brian B. Oakley
Publikováno v:
Frontiers in Veterinary Science, Vol 9 (2022)
In chickens, early life exposure to environmental microbes has long-lasting impacts on gastrointestinal (GI) microbiome development and host health and growth, via mechanisms that remain uncharacterized. In this study, we demonstrated that administra
Externí odkaz:
https://doaj.org/article/8f5a346c0d0c41dc9a67f4c8b5a8a37c
Autor:
Arkadiy I. Garber, Jessica R. Zehnpfennig, Cody S. Sheik, Michael W. Henson, Gustavo A. Ramírez, Andrew R. Mahon, Kenneth M. Halanych, Deric R. Learman
Publikováno v:
mSphere, Vol 6, Iss 6 (2021)
ABSTRACT The microbial biogeochemical processes occurring in marine sediment in Antarctica remain underexplored due to limited access. Further, these polar habitats are unique, as they are being exposed to significant changes in their climate. To exp
Externí odkaz:
https://doaj.org/article/ee69af8b6077479b81c845d8f56cf30a
The Bioinformatics Virtual Coordination Network: An Open-Source and Interactive Learning Environment
Autor:
Benjamin J. Tully, Joy Buongiorno, Ashley B. Cohen, Jacob A. Cram, Arkadiy I. Garber, Sarah K. Hu, Arianna I. Krinos, Philip T. Leftwich, Alexis J. Marshall, Ella T. Sieradzki, Daan R. Speth, Elizabeth A Suter, Christopher B. Trivedi, Luis E. Valentin-Alvarado, JL Weissman
Publikováno v:
Frontiers in Education, Vol 6 (2021)
Lockdowns and “stay-at-home” orders, starting in March 2020, shuttered bench and field dependent research across the world as a consequence of the global COVID-19 pandemic. The pandemic continues to have an impact on research progress and career
Externí odkaz:
https://doaj.org/article/3c53032fb9e343b5bc0f6445fc7709f2
Autor:
Catherine R. Armbruster, Christopher W. Marshall, Arkadiy I. Garber, Jeffrey A. Melvin, Anna C. Zemke, John Moore, Paula F. Zamora, Kelvin Li, Ian L. Fritz, Christopher D. Manko, Madison L. Weaver, Jordan R. Gaston, Alison Morris, Barbara Methé, William H. DePas, Stella E. Lee, Vaughn S. Cooper, Jennifer M. Bomberger
Publikováno v:
Cell Reports, Vol 37, Iss 3, Pp 109829- (2021)
Summary: Pseudomonas aeruginosa notoriously adapts to the airways of people with cystic fibrosis (CF), yet how infection-site biogeography and associated evolutionary processes vary as lifelong infections progress remains unclear. Here we test the hy
Externí odkaz:
https://doaj.org/article/49c55f56b39949d0b3f4fb82ffc0cac2
Autor:
Arkadiy I. Garber, Ashley B. Cohen, Kenneth H. Nealson, Gustavo A. Ramírez, Roman A. Barco, Tristan C. Enzingmüller-Bleyl, Michelle M. Gehringer, Nancy Merino
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
Microbial iron cycling influences the flux of major nutrients in the environment (e.g., through the adsorptive capacity of iron oxides) and includes biotically induced iron oxidation and reduction processes. The ecological extent of microbial iron cy
Externí odkaz:
https://doaj.org/article/69babeae1f7645c9a51b1c114f77a9eb
Autor:
Jessica L. Keffer, Sean M. McAllister, Arkadiy I. Garber, Beverly J. Hallahan, Molly C. Sutherland, Sharon Rozovsky, Clara S. Chan
Publikováno v:
mBio, Vol 12, Iss 4 (2021)
ABSTRACT Iron (Fe) oxidation is one of Earth’s major biogeochemical processes, key to weathering, soil formation, water quality, and corrosion. However, our understanding of microbial contribution is limited by incomplete knowledge of microbial iro
Externí odkaz:
https://doaj.org/article/5e4619a44bb34d8592b27f6eca18c546
Autor:
Scott R. Miller, Heidi E. Abresch, Jacob J. Baroch, Caleb K. Fishman Miller, Arkadiy I. Garber, Andrew R. Oman, Nikea J. Ulrich
Publikováno v:
Microorganisms, Vol 10, Iss 3, p 569 (2022)
The Chlorophyll d-producing cyanobacterium Acaryochloris marina is widely distributed in marine environments enriched in far-red light, but our understanding of its genomic and functional diversity is limited. Here, we take an integrative approach to
Externí odkaz:
https://doaj.org/article/5a4040d4279848c49cbd49ec77dbdd16