Zobrazeno 1 - 10
of 20
pro vyhledávání: '"Arjun Biddanda"'
Autor:
Arjun Biddanda, Esha Bandyopadhyay, Constanza de la Fuente Castro, David Witonsky, Jose A. Urban Aragon, Nagarjuna Pasupuleti, Hannah M. Moots, Renée Fonseca, Suzanne Freilich, Jovan Stanisavic, Tabitha Willis, Anoushka Menon, Mohammed S. Mustak, Chinnappa Dilip Kodira, Anjaparavanda P. Naren, Mithun Sikdar, Niraj Rai, Maanasa Raghavan
Publikováno v:
HGG Advances, Vol 5, Iss 3, Pp 100305- (2024)
Summary: Over the past decade, genomic data have contributed to several insights on global human population histories. These studies have been met both with interest and critically, particularly by populations with oral histories that are records of
Externí odkaz:
https://doaj.org/article/58a4b13e92f24fdc90257a37cfff114c
Autor:
Charles Washington, Matthew Dapas, Arjun Biddanda, Kevin M. Magnaye, Ivy Aneas, Britney A. Helling, Brooke Szczesny, Meher Preethi Boorgula, Margaret A. Taub, Eimear Kenny, Rasika A. Mathias, Kathleen C. Barnes, CAAPA, Gurjit K. Khurana Hershey, Carolyn M. Kercsmar, Jessica D. Gereige, Melanie Makhija, Rebecca S. Gruchalla, Michelle A. Gill, Andrew H. Liu, Deepa Rastogi, William Busse, Peter J. Gergen, Cynthia M. Visness, Diane R. Gold, Tina Hartert, Christine C. Johnson, Robert F. Lemanske, Fernando D. Martinez, Rachel L. Miller, Dennis Ownby, Christine M. Seroogy, Anne L. Wright, Edward M. Zoratti, Leonard B. Bacharier, Meyer Kattan, George T. O’Connor, Robert A. Wood, Marcelo A. Nobrega, Matthew C. Altman, Daniel J. Jackson, James E. Gern, Christopher G. McKennan, Carole Ober
Publikováno v:
Genome Medicine, Vol 14, Iss 1, Pp 1-16 (2022)
Abstract Background Asthma is the most common chronic disease in children, occurring at higher frequencies and with more severe disease in children with African ancestry. Methods We tested for association with haplotypes at the most replicated and si
Externí odkaz:
https://doaj.org/article/0d8b1bafd774497eb37ab1773c9c191e
Autor:
M Elise Lauterbur, Maria Izabel A Cavassim, Ariella L Gladstein, Graham Gower, Nathaniel S Pope, Georgia Tsambos, Jeffrey Adrion, Saurabh Belsare, Arjun Biddanda, Victoria Caudill, Jean Cury, Ignacio Echevarria, Benjamin C Haller, Ahmed R Hasan, Xin Huang, Leonardo Nicola Martin Iasi, Ekaterina Noskova, Jana Obsteter, Vitor Antonio Correa Pavinato, Alice Pearson, David Peede, Manolo F Perez, Murillo F Rodrigues, Chris CR Smith, Jeffrey P Spence, Anastasia Teterina, Silas Tittes, Per Unneberg, Juan Manuel Vazquez, Ryan K Waples, Anthony Wilder Wohns, Yan Wong, Franz Baumdicker, Reed A Cartwright, Gregor Gorjanc, Ryan N Gutenkunst, Jerome Kelleher, Andrew D Kern, Aaron P Ragsdale, Peter L Ralph, Daniel R Schrider, Ilan Gronau
Publikováno v:
eLife, Vol 12 (2023)
Simulation is a key tool in population genetics for both methods development and empirical research, but producing simulations that recapitulate the main features of genomic datasets remains a major obstacle. Today, more realistic simulations are pos
Externí odkaz:
https://doaj.org/article/ed75e3569fbf474782ef3b9546fe2394
Publikováno v:
eLife, Vol 9 (2020)
A key challenge in human genetics is to understand the geographic distribution of human genetic variation. Often genetic variation is described by showing relationships among populations or individuals, drawing inferences over many variants. Here, we
Externí odkaz:
https://doaj.org/article/d513162c47f94ca3acd48509bf13abb8
Autor:
Yedael Y Waldman, Arjun Biddanda, Natalie R Davidson, Paul Billing-Ross, Maya Dubrovsky, Christopher L Campbell, Carole Oddoux, Eitan Friedman, Gil Atzmon, Eran Halperin, Harry Ostrer, Alon Keinan
Publikováno v:
PLoS ONE, Vol 11, Iss 3, p e0152056 (2016)
The Bene Israel Jewish community from West India is a unique population whose history before the 18th century remains largely unknown. Bene Israel members consider themselves as descendants of Jews, yet the identity of Jewish ancestors and their arri
Externí odkaz:
https://doaj.org/article/82486e4fb7c14e67b5bb94ed2e7d7d6d
Autor:
Brian C. Zhang, Arjun Biddanda, Árni Freyr Gunnarsson, Fergus Cooper, Pier Francesco Palamara
Genome-wide genealogies compactly represent the evolutionary history of a set of genomes and inferring them from genetic data has the potential to facilitate a wide range of analyses. We introduce a method, ARG-Needle, for accurately inferring bioban
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a189ac5a4763691f46fcec7ff4e9cd5d
https://ora.ox.ac.uk/objects/uuid:191f6300-91e7-4e3b-8992-fe6fb69624ca
https://ora.ox.ac.uk/objects/uuid:191f6300-91e7-4e3b-8992-fe6fb69624ca
Autor:
M. Elise Lauterbur, Maria Izabel A. Cavassim, Ariella L. Gladstein, Graham Gower, Nathaniel S. Pope, Georgia Tsambos, Jeff Adrion, Saurabh Belsare, Arjun Biddanda, Victoria Caudill, Jean Cury, Ignacio Echevarria, Benjamin C. Haller, Ahmed R. Hasan, Xin Huang, Leonardo Nicola Martin Iasi, Ekaterina Noskova, Jana Obšteter, Vitor Antonio Corrêa Pavinato, Alice Pearson, David Peede, Manolo F. Perez, Murillo F. Rodrigues, Chris C. R. Smith, Jeffrey P. Spence, Anastasia Teterina, Silas Tittes, Per Unneberg, Juan Manuel Vazquez, Ryan K. Waples, Anthony Wilder Wohns, Yan Wong, Franz Baumdicker, Reed A. Cartwright, Gregor Gorjanc, Ryan N. Gutenkunst, Jerome Kelleher, Andrew D. Kern, Aaron P. Ragsdale, Peter L. Ralph, Daniel R. Schrider, Ilan Gronau
Publikováno v:
Lauterbur, M E, Cavassim, M I A, Gladstein, A L, Gower, G, Pope, N S, Tsambos, G, Adrion, J, Belsare, S, Biddanda, A, Caudill, V, Cury, J, Echevarria, I, Haller, B C, Hasan, A R, Huang, X, Iasi, L N M, Noskova, E, Obsteter, J, Pavinato, V A C, Pearson, A, Peede, D, Perez, M F, Rodrigues, M F, Smith, C C R, Spence, J P, Teterina, A, Tittes, S, Unneberg, P, Vazquez, J M, Waples, R K, Wohns, A W, Wong, Y, Baumdicker, F, Cartwright, R A, Gorjanc, G, Gutenkunst, R N, Kelleher, J, Kern, A D, Ragsdale, A P, Ralph, P L, Schrider, D R & Gronau, I 2023, ' Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations ', eLIFE, vol. 12, no. RP84874, pp. 1-20 . https://doi.org/10.7554/eLife.84874
eLife
Lauterbur, M E, Cavassim, M I A, Gladstein, A L, Gower, G, Pope, N S, Tsambos, G, Adrion, J, Belsare, S, Biddanda, A, Caudill, V, Cury, J, Echevarria, I, Haller, B C, Hasan, A R, Huang, X, Iasi, L N M, Noskova, E, Obsteter, J, Pavinato, V A C, Pearson, A, Peede, D, Perez, M F, Rodrigues, M F, Smith, C C R, Spence, J P, Teterina, A, Tittes, S, Unneberg, P, Vazquez, J M, Waples, R K, Wohns, A W, Wong, Y, Baumdicker, F, Cartwright, R A, Gorjanc, G, Gutenkunst, R N, Kelleher, J, Kern, A D, Ragsdale, A P, Ralph, P L, Schrider, D R & Gronau, I 2023, ' Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations ', eLife, vol. 12, RP84874 . https://doi.org/10.7554/eLife.84874
eLife
Lauterbur, M E, Cavassim, M I A, Gladstein, A L, Gower, G, Pope, N S, Tsambos, G, Adrion, J, Belsare, S, Biddanda, A, Caudill, V, Cury, J, Echevarria, I, Haller, B C, Hasan, A R, Huang, X, Iasi, L N M, Noskova, E, Obsteter, J, Pavinato, V A C, Pearson, A, Peede, D, Perez, M F, Rodrigues, M F, Smith, C C R, Spence, J P, Teterina, A, Tittes, S, Unneberg, P, Vazquez, J M, Waples, R K, Wohns, A W, Wong, Y, Baumdicker, F, Cartwright, R A, Gorjanc, G, Gutenkunst, R N, Kelleher, J, Kern, A D, Ragsdale, A P, Ralph, P L, Schrider, D R & Gronau, I 2023, ' Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations ', eLife, vol. 12, RP84874 . https://doi.org/10.7554/eLife.84874
Simulation is a key tool in population genetics for both methods development and empirical research, but producing simulations that recapitulate the main features of genomic data sets remains a major obstacle. Today, more realistic simulations are po
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8243d8d49970ab6eb1bb1ba7366c0d8f
http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-508060
http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-508060
Autor:
Arjun Biddanda, Karen Perez de Arce, Golibe Eze-Echesi, Chiamaka Nwuba, Yusuf Ibrahim, Olubukunola Oyedele, Esha Joshi, Boladale Alalade, Olanrewaju Ajayi, Chidimma Nwatu, Aminu Yakubu, Abasi Ene-Obong, Jumi Popoola, Colm O’Dushlaine, Peter Fekkes
Proteomic variation between individuals has immense potential for identifying novel drug targets and disease mechanisms. However, with high-throughput proteomic technologies still in their infancy, they have largely been applied in large majority Eur
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::aa8c7b4063b6ade838ddf21c76496497
https://doi.org/10.1101/2022.12.09.519773
https://doi.org/10.1101/2022.12.09.519773
Publikováno v:
Genetics. 221(1)
Archeogenetics has been revolutionary, revealing insights into demographic history and recent positive selection. However, most studies to date have ignored the nonrandom association of genetic variants at different loci (i.e. linkage disequilibrium)
Accurate inference of gene genealogies from genetic data has the potential to facilitate a wide range of analyses. We introduce a method for accurately inferring biobank-scale genome-wide genealogies from sequencing or genotyping array data, as well
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ce90feff1d5a47fea58ba3e466151685
https://doi.org/10.1101/2021.11.03.466843
https://doi.org/10.1101/2021.11.03.466843