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Akademický článek

Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history

Autor: Ariane Bize, Cédric Midoux, Mahendra Mariadassou, Sophie Schbath, Patrick Forterre, Violette Da Cunha

Publikováno v: BMC Genomics, Vol 22, Iss 1, Pp 1-22 (2021)

Abstract Background K-mer-based methods have greatly advanced in recent years, largely driven by the realization of their biological significance and by the advent of next-generation sequencing. Their speed and their independence from the annotation

Externí odkaz: https://doaj.org/article/a7e90addb57b47a1992fd79eeb0adba8

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Akademický článek

Bacterial Consumption of T4 Phages

Autor: Jean-Jacques Godon, Ariane Bize, Hoang Ngo, Laurent Cauquil, Mathieu Almeida, Marie-Agnès Petit, Olivier Zemb

Publikováno v: Microorganisms, Vol 9, Iss 9, p 1852 (2021)

The bacterial consumption of viruses not been reported on as of yet even though bacteria feed on almost anything. Viruses are widely distributed but have no acknowledged active biocontrol. Viral biomass undoubtedly reintegrates trophic cycles; howeve

Externí odkaz: https://doaj.org/article/28929f9059754e55a3aa44fc1a318476

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Akademický článek

Whole Proteome Analyses on Ruminiclostridium cellulolyticum Show a Modulation of the Cellulolysis Machinery in Response to Cellulosic Materials with Subtle Differences in Chemical and Structural Properties.

Autor: Nelly Badalato, Alain Guillot, Victor Sabarly, Marc Dubois, Nina Pourette, Bruno Pontoire, Paul Robert, Arnaud Bridier, Véronique Monnet, Diana Z Sousa, Sylvie Durand, Laurent Mazéas, Alain Buléon, Théodore Bouchez, Gérard Mortha, Ariane Bize

Publikováno v: PLoS ONE, Vol 12, Iss 1, p e0170524 (2017)

Lignocellulosic materials from municipal solid waste emerge as attractive resources for anaerobic digestion biorefinery. To increase the knowledge required for establishing efficient bioprocesses, dynamics of batch fermentation by the cellulolytic ba

Externí odkaz: https://doaj.org/article/d44bc5f35cf94252b454c2fd9fbc1649

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Akademický článek

Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon

Autor: Carole Jaubert, Chloë Danioux, Jacques Oberto, Diego Cortez, Ariane Bize, Mart Krupovic, Qunxin She, Patrick Forterre, David Prangishvili, Guennadi Sezonov

Publikováno v: Open Biology, Vol 3, Iss 4 (2013)

The 2 465 177 bp genome of Sulfolobus islandicus LAL14/1, host of the model rudivirus SIRV2, was sequenced. Exhaustive comparative genomic analysis of S. islandicus LAL14/1 and the nine other completely sequenced S. islandicus strains isolated from I

Externí odkaz: https://doaj.org/article/785bbcae0d53432bb3b856f00bb4aedc

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Impacts of disinfected wastewater irrigation on soil characteristics, microbial community composition, and crop yield

Autor: Lays Paulino Leonel, Ariane Bize, Mahendra Mariadassou, Cédric Midoux, Jerusa Schneider, Adriano Luiz Tonetti

Publikováno v: Blue-Green Systems. 4:247-271

For agricultural reuse, the disinfection treatment must be efficient to inactivate the resistant pathogens and must not generate harmful byproducts for the soil and crop production. Thus, the aim of this work was to evaluate the possible impacts caus

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::8fcbaeb14ff2324b77e8bee2f3479dec
https://doi.org/10.2166/bgs.2022.126

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Acidic Inhibition and Microbial Community Adaptation During Mesophilic Dry Anaerobic Co-Digestion of Racehorse Manure and Organic Household Waste

Autor: Franciele Camargo, Céline Roose-Amsaleg, Sabrina GUERIN RECHDAOUI, Carlyne LACROIX, Anne Goubet, Chrystelle Bureau, Céline Madigou, Cédric Midoux, Lays Paulino Leonel, Adriano Luiz Tonetti, Maria Bernadete Amancio Varesche, Vincent ROCHER, Ariane BIZE

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::87717300b1bff32af3f51b883930c0e3
https://doi.org/10.2139/ssrn.4462358

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Viral DNA SIP: the isotopic composition of virions is correlated with that of the substrate used for host growth

Autor: Vuong Quoc Hoang Ngo, Maximilien Sotomski, Angeline Guenne, Mahendra Mariadassou, Mart Krupovic, François Enault, Ariane Bize

DNA Stable Isotope Probing is emerging as a powerful tool to study host-virus interactions. Indeed, since all viruses depend on a host for virion production, a link between the isotopic compositions of hosts and the virions they produce is expected.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::d58373d83bdeca723bf91f8466cb7ed0
https://doi.org/10.1101/2022.10.15.512377

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Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics

Autor: Vuong Quoc Hoang Ngo, François Enault, Cédric Midoux, Mahendra Mariadassou, Olivier Chapleur, Laurent Mazéas, Valentin Loux, Théodore Bouchez, Mart Krupovic, Ariane Bize

Publikováno v: Environmental Microbiology
Environmental Microbiology, 2022, ⟨10.1111/1462-2920.16120⟩

International audience; Diversity of viruses infecting non-extremophilic archaea has been grossly understudied. This is particularly the case for viruses infecting methanogenic archaea, key players in the global carbon biogeochemical cycle. Only a do

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::460ddfa383cfbfa441d96314f9c29fdd
https://hal.inrae.fr/hal-03727436

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Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history

Autor: Sophie Schbath, Mahendra Mariadassou, Violette Da Cunha, Cédric Midoux, Patrick Forterre, Ariane Bize

Publikováno v: BMC Genomics, Vol 22, Iss 1, Pp 1-22 (2021)
BMC Genomics
BMC Genomics, BioMed Central, 2021, 22, ⟨10.1186/s12864-021-07471-y⟩

Background K-mer-based methods have greatly advanced in recent years, largely driven by the realization of their biological significance and by the advent of next-generation sequencing. Their speed and their independence from the annotation process a

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1f6301ee0ddcd7d4dac8be089f320a82
https://doaj.org/article/a7e90addb57b47a1992fd79eeb0adba8

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Screening design of nutritional and physicochemical parameters on bio-hydrogen and volatile fatty acids production from Citrus Peel Waste in batch reactors

Autor: Isabel Kimiko Sakamoto, Iolanda Cristina Silveira Duarte, Ariane Bize, Franciele Pereira Camargo, Maria Bernadete Amâncio Varesche, Edson Luiz Silva

Publikováno v: International Journal of Hydrogen Energy
International Journal of Hydrogen Energy, Elsevier, 2021, 46 (11), pp.7794-7809. ⟨10.1016/j.ijhydene.2020.06.084⟩
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP

International audience; Different nutritional and physicochemical conditions to obtain H2 from Citrus Peel Waste (CPW) were evaluated. For this, a screening design was carried out using Plackett and Burman design, in order to verify the main signific

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1dfa655d78f80c6564d64b9fc2486451
https://doi.org/10.1016/j.ijhydene.2020.06.084

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