Výsledky vyhledávání - "Archaea/classification"

Predicted microbial secretomes and their target substrates in marine sediment

Autor: Warren R. Francis, William D. Orsi, Thomas A. Richards

Publikováno v: Orsi, W D, Richards, T A & Francis, W R 2018, ' Predicted microbial secretomes and their target substrates in marine sediment ', Nature Microbiology, vol. 3, no. 1, pp. 32-37 . https://doi.org/10.1038/s41564-017-0047-9

Scientific drilling has identified a biosphere in marine sediments 1 , which contain many uncultivated microbial groups known only by their DNA sequences 2–4 . Recycling of organic matter in sediments is an important component of biogeochemical cyc

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9575756e033badeae24d611bd1da45d9
https://doi.org/10.1038/s41564-017-0047-9

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The growing tree of Archaea: new perspectives on their diversity, evolution and ecology

Autor: Guillaume Borrel, Céline Brochier-Armanet, Panagiotis S. Adam, Simonetta Gribaldo

Publikováno v: ISME Journal
ISME Journal, 2017, 11 (11), pp.2407-2425. ⟨10.1038/ismej.2017.122⟩
ISME Journal, Nature Publishing Group, 2017, 11 (11), pp.2407-2425. ⟨10.1038/ismej.2017.122⟩

International audience; The Archaea occupy a key position in the Tree of Life, and are a major fraction of microbial diversity. Abundant in soils, ocean sediments and the water column, they have crucial roles in processes mediating global carbon and

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::31d3457d5d2b06a8d19ee85218d4bd95
https://doi.org/10.1038/ismej.2017.122

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The OMA orthology database in 2018: Retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces

Autor: Altenhoff, Adrian M, Glover, Natasha M, Train, Clément-Marie, Kaleb, Klara, Warwick Vesztrocy, Alex, Dylus, David, de Farias, Tarcisio M, Zile, Karina, Stevenson, Charles, Long, Jiao, Redestig, Henning, Gonnet, Gaston H, Dessimoz, Christophe

Publikováno v: Nucleic Acids Research, 46 (D1)
Nucleic acids research, vol. 46, no. D1, pp. D477-D485
Nucleic Acids Research

The Orthologous Matrix (OMA) is a leading resource to relate genes across many species from all of life. In this update paper, we review the recent algorithmic improvements in the OMA pipeline, describe increases in species coverage (particularly in

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::9629d077c2f126752bc252fdc89f112b
https://hdl.handle.net/20.500.11850/237426

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Cyanate and urea are substrates for nitrification by Thaumarchaeota in the marine environment

Autor: Laura A. Bristow, Marcel M. M. Kuypers, Abiel T. Kidane, Sten Littmann, Craig W. Herbold, Katharina Kitzinger, Philipp F. Hach, Cory C. Padilla, Andreas Richter, Maria Mooshammer, Frank J. Stewart, Sandra Petrov, Hannah K. Marchant, Martin Könneke, Michael Wagner, Jutta Niggemann

Publikováno v: Kitzinger, K, Padilla, C C, Marchant, H K, Hach, P F, Herbold, C W, Kidane, A T, Könneke, M, Littmann, S, Mooshammer, M, Niggemann, J, Petrov, S, Richter, A, Stewart, F J, Wagner, M, Kuypers, M M M & Bristow, L A 2019, ' Cyanate and urea are substrates for nitrification by Thaumarchaeota in the marine environment ', Nature Microbiology, vol. 4, no. 2, pp. 234-243 . https://doi.org/10.1038/s41564-018-0316-2

Ammonia-oxidizing archaea of the phylum Thaumarchaeota are among the most abundant marine microorganisms1. These organisms thrive in the oceans despite ammonium being present at low nanomolar concentrations2,3. Some Thaumarchaeota isolates have been

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cdfc4d325f4c2067b0f06e30677a3bba
https://pubmed.ncbi.nlm.nih.gov/30531977

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Characterization and quantification of ammonia-oxidizing archaea (AOA) and bacteria (AOB) in a nitrogen-removing reactor using T-RFLP and qPCR

Autor: Tao Jin, Tong Zhang, Qingmei Yan

Publikováno v: Applied Microbiology and Biotechnology

Using ammonia monooxygenase α-subunit (amoA) gene and 16S rRNA gene, the community structure and abundance of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in a nitrogen-removing reactor, which was operated for five phases, we

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https://doi.org/10.1007/s00253-010-2595-2

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Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage:Microbial stratification in low pH (sub)oxic AMD

Autor: Méndez-García, Celia, Mesa, Victoria, Sprenger, Richard Remko, Richter, Michael, Diez, María Suárez, Solano, Jennifer, Bargiela, Rafael, Golyshina, Olga V, Manteca, Angel, Ramos, Juan Luis, Gallego, José R, Llorente, Irene, Martins Dos Santos, Vitor Ap, Jensen, Ole N, Peláez, Ana I, Sánchez, Jesús, Ferrer, Manuel

Publikováno v: Méndez-García, C, Mesa, V, Sprenger, R R, Richter, M, Diez, M S, Solano, J, Bargiela, R, Golyshina, O V, Manteca, A, Ramos, J L, Gallego, J R, Llorente, I, Martins Dos Santos, V A, Jensen, O N, Peláez, A I, Sánchez, J & Ferrer, M 2014, ' Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage : Microbial stratification in low pH (sub)oxic AMD ', I S M E Journal, vol. 8, pp. 1259-1274 . https://doi.org/10.1038/ismej.2013.242

Macroscopic growths at geographically separated acid mine drainages (AMDs) exhibit distinct populations. Yet, local heterogeneities are poorly understood. To gain novel mechanistic insights into this, we used OMICs tools to profile microbial populati

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______3062::19524f81f45974cf431d41fb7dbe96dc
https://portal.findresearcher.sdu.dk/da/publications/8a8916df-0c3a-4fc3-a77f-71dda0ec8785

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Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface

Publikováno v: Nature Communications
Nature Communications, 2014, 5, pp.5497. ⟨10.1038/ncomms6497⟩
Nature Communications, Nature Publishing Group, 2014, 5, pp.5497. ⟨10.1038/ncomms6497⟩

International audience; Subsurface microbial life contributes significantly to biogeochemical cycling, yet it remains largely uncharacterized, especially its archaeal members. This 'microbial dark matter' has been explored by recent studies that were

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::79f6f70025a3e3180bc754f4190b7d18
https://pubmed.ncbi.nlm.nih.gov/25425419

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Taxonomic and functional prokaryote diversity in mildly arsenic-contaminated sediments

Autor: David Halter, Florence Goulhen-Chollet, Audrey Cordi, Fabienne Séby, Christophe Pagnout, Christine Schaeffer, Philippe N. Bertin, Sebastien Gallien, Simonetta Gribaldo, Didier Montaut, Florence Arsène-Ploetze, Pascale Bauda, Alain Van Dorsselaer, Christine Carapito, Audrey Heinrich-Salmeron

Publikováno v: Research in Microbiology
Research in Microbiology, 2011, 162 (9), pp.877-887. ⟨10.1016/j.resmic.2011.06.001⟩
Research in Microbiology, Elsevier, 2011, 162 (9), pp.877-887. ⟨10.1016/j.resmic.2011.06.001⟩

International audience; Arsenic-resistant prokaryote diversity is far from being exhaustively explored. In this study, the arsenic-adapted prokaryotic community present in a moderately arsenic-contaminated site near Sainte-Marie-aux-Mines (France) wa

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::86091aef806c17c79972c59f0426a3b2
https://hal-pasteur.archives-ouvertes.fr/pasteur-02445836/file/Halter_et-al_res-mic_2011-162.pdf

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Spatial distribution and abundances of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in mangrove sediments

Autor: Meng Li, Ji-Dong Gu, Yiguo Hong, Huiluo Cao

Publikováno v: Applied Microbiology and Biotechnology

We investigated the diversity, spatial distribution, and abundances of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in sediment samples of different depths collected from a transect with different distances to mangrove forest

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e319ed040c3961ac9914749790e440a3
https://pubmed.ncbi.nlm.nih.gov/20953601

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Phylogenomics of the archaeal flagellum: rare horizontal gene transfer in a unique motility structure

Autor: Simonetta Gribaldo, Céline Brochier-Armanet, Elie Desmond

Publikováno v: BMC Evolutionary Biology
BMC Evolutionary Biology, BioMed Central, 2007, 7, pp.53-70. ⟨10.1186/1471-2148-7-106⟩
BMC Evolutionary Biology, BioMed Central, 2007, 7, pp.106. ⟨10.1186/1471-2148-7-106⟩
BMC Evolutionary Biology, 2007, 7, pp.53-70. ⟨10.1186/1471-2148-7-106⟩
BMC Evolutionary Biology (7), 106. (2007)
BMC Evolutionary Biology, Vol 7, Iss 1, p 106 (2007)

Background As bacteria, motile archaeal species swim by means of rotating flagellum structures driven by a proton gradient force. Interestingly, experimental data have shown that the archaeal flagellum is non-homologous to the bacterial flagellum eit

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a0bb49ee76f157ff9aeab1b0b9b843d0
https://hal.archives-ouvertes.fr/hal-00698404

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