Zobrazeno 1 - 10
of 98
pro vyhledávání: '"Anup Mahurkar"'
Autor:
Amol Carl Shetty, John Sivinski, Jessica Cornell, Carrie McCracken, Lisa Sadzewicz, Anup Mahurkar, Xing-Qun Wang, Luana Colloca, Weihong Lin, Nageswara Pilli, Maureen A. Kane, Chamindi Seneviratne
Publikováno v:
Scientific Reports, Vol 14, Iss 1, Pp 1-13 (2024)
Abstract Molecular responses to alcohol consumption are dynamic, context-dependent, and arise from a complex interplay of biological and external factors. While many have studied genetic risk associated with drinking patterns, comprehensive studies i
Externí odkaz:
https://doaj.org/article/46f8d1b03a29479b885e12f242d0224f
Autor:
Matthew Chung, Vincent M. Bruno, David A. Rasko, Christina A. Cuomo, José F. Muñoz, Jonathan Livny, Amol C. Shetty, Anup Mahurkar, Julie C. Dunning Hotopp
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-23 (2021)
Abstract Advances in transcriptome sequencing allow for simultaneous interrogation of differentially expressed genes from multiple species originating from a single RNA sample, termed dual or multi-species transcriptomics. Compared to single-species
Externí odkaz:
https://doaj.org/article/88f8221297974a8dac07934a265c6727
Autor:
Justin Wagner, Jayaram Kancherla, Domenick Braccia, James Matsumara, Victor Felix, Jonathan Crabtree, Anup Mahurkar, Héctor Corrada Bravo
Publikováno v:
F1000Research, Vol 9 (2021)
The rich data produced by the second phase of the Human Microbiome Project (iHMP) offers a unique opportunity to test hypotheses that interactions between microbial communities and a human host might impact an individual’s health or disease status.
Externí odkaz:
https://doaj.org/article/376108f5f5c54fc5a1d498c4d57569a1
Autor:
Matthew Chung, Ricky S. Adkins, John S. A. Mattick, Katie R. Bradwell, Amol C. Shetty, Lisa Sadzewicz, Luke J. Tallon, Claire M. Fraser, David A. Rasko, Anup Mahurkar, Julie C. Dunning Hotopp
Publikováno v:
mSystems, Vol 6, Iss 1 (2021)
ABSTRACT Quantification tools for RNA sequencing (RNA-Seq) analyses are often designed and tested using human transcriptomics data sets, in which full-length transcript sequences are well annotated. For prokaryotic transcriptomics experiments, full-l
Externí odkaz:
https://doaj.org/article/b4053ee518834536913a290b2a6553e9
Autor:
Yang Song, Beatrice Milon, Sandra Ott, Xuechu Zhao, Lisa Sadzewicz, Amol Shetty, Erich T. Boger, Luke J. Tallon, Robert J. Morell, Anup Mahurkar, Ronna Hertzano
Publikováno v:
BMC Genomics, Vol 19, Iss 1, Pp 1-16 (2018)
Abstract Background Cell type-specific ribosome-pulldown has become an increasingly popular method for analysis of gene expression. It allows for expression analysis from intact tissues and monitoring of protein synthesis in vivo. However, while its
Externí odkaz:
https://doaj.org/article/ded22db5c2154d028ffb1492693fae89
Autor:
Justin Wagner, Jayaram Kancherla, Domenick Braccia, James Matsumara, Victor Felix, Jonathan Crabtree, Anup Mahurkar, Héctor Corrada Bravo
Publikováno v:
F1000Research, Vol 9 (2020)
The rich data produced by the second phase of the Human Microbiome Project (iHMP) offers a unique opportunity to test hypotheses that interactions between microbial communities and a human host might impact an individual’s health or disease status.
Externí odkaz:
https://doaj.org/article/e985d6a4b7fd411b8d5bf8306e35fff5
Autor:
Matthew Chung, Laura E. Teigen, Silvia Libro, Robin E. Bromley, Dustin Olley, Nikhil Kumar, Lisa Sadzewicz, Luke J. Tallon, Anup Mahurkar, Jeremy M. Foster, Michelle L. Michalski, Julie C. Dunning Hotopp
Publikováno v:
mSystems, Vol 4, Iss 6 (2019)
ABSTRACT To better understand the transcriptomic interplay of organisms associated with lymphatic filariasis, we conducted multispecies transcriptome sequencing (RNA-Seq) on the filarial nematode Brugia malayi, its Wolbachia endosymbiont wBm, and its
Externí odkaz:
https://doaj.org/article/1e447a65c7f547f7b29505baa9201b24
Autor:
Sonia Agrawal, Cesar Arze, Ricky S. Adkins, Jonathan Crabtree, David Riley, Mahesh Vangala, Kevin Galens, Claire M. Fraser, Hervé Tettelin, Owen White, Samuel V. Angiuoli, Anup Mahurkar, W. Florian Fricke
Publikováno v:
BMC Genomics, Vol 18, Iss 1, Pp 1-11 (2017)
Abstract Background The benefit of increasing genomic sequence data to the scientific community depends on easy-to-use, scalable bioinformatics support. CloVR-Comparative combines commonly used bioinformatics tools into an intuitive, automated, and c
Externí odkaz:
https://doaj.org/article/157a446743d94599a971c4505c4ffbce
Autor:
Susan G Dorsey, Cynthia L Renn, Mari Griffioen, Cameron B Lassiter, Shijun Zhu, Heather Huot-Creasy, Carrie McCracken, Anup Mahurkar, Amol C Shetty, Colleen K Jackson-Cook, Hyungsuk Kim, Wendy A Henderson, Leorey Saligan, Jessica Gill, Luana Colloca, Debra E Lyon, Angela R Starkweather
Publikováno v:
PLoS ONE, Vol 14, Iss 5, p e0216539 (2019)
The mechanisms underlying the transition from acute to chronic pain remain unclear. Here, we sought to characterize the transcriptome associated with chronic low back pain as well as the transcriptome of the transition from acute to chronic low back
Externí odkaz:
https://doaj.org/article/bc47f946848d49b79ba34b1dbb87f23a
Publikováno v:
International Journal of Molecular Sciences, Vol 19, Iss 12, p 3990 (2018)
Multiple sclerosis (MS) is a debilitating autoimmune disease affecting over 2.3 million people worldwide, and it is characterized by inflammation and demyelination of nerve cells. The currently available biomarkers for the diagnosis and management of
Externí odkaz:
https://doaj.org/article/516bfd396672455587a47b9a2012d35f