Zobrazeno 1 - 10
of 25
pro vyhledávání: '"Anton I. Petrov"'
Autor:
Sandra Triebel, Kevin Lamkiewicz, Nancy Ontiveros, Blake Sweeney, Peter F. Stadler, Anton I. Petrov, Michael Niepmann, Manja Marz
Publikováno v:
Scientific Reports, Vol 14, Iss 1, Pp 1-12 (2024)
Abstract Hepatitis C virus (HCV) is a plus-stranded RNA virus that often chronically infects liver hepatocytes and causes liver cirrhosis and cancer. These viruses replicate their genomes employing error-prone replicases. Thereby, they routinely gene
Externí odkaz:
https://doaj.org/article/60cac77d8c7c49d1b81ee5d4959f6b3e
Autor:
Blake A. Sweeney, David Hoksza, Eric P. Nawrocki, Carlos Eduardo Ribas, Fábio Madeira, Jamie J. Cannone, Robin Gutell, Aparna Maddala, Caeden D. Meade, Loren Dean Williams, Anton S. Petrov, Patricia P. Chan, Todd M. Lowe, Robert D. Finn, Anton I. Petrov
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-12 (2021)
Non-coding RNA function is poorly understood, partly due to the challenge of determining RNA secondary (2D) structure. Here, the authors present a framework for the reproducible prediction and visualization of the 2D structure of a wide array of RNAs
Externí odkaz:
https://doaj.org/article/08c55853e54b4060954e1a43ffedc3a6
Autor:
Gaia Cantelli, Rahuman S Malik-Sheriff, Paul Flicek, Ewan Birney, Cath Brooksbank, Alex Bateman, Johanna McEntyre, Anton I. Petrov, Henning Hermjakob, Michele Ide-Smith, Rolf Apweiler
Publikováno v:
Nucleic Acids Research
The European Bioinformatics Institute (EMBL-EBI) maintains a comprehensive range of freely available and up-to-date molecular data resources, which includes over 40 resources covering every major data type in the life sciences. This year's service up
Autor:
Eric P. Nawrocki, Aparna Maddala, Jamie J. Cannone, Robin R. Gutell, Patricia P. Chan, Todd M. Lowe, Blake A. Sweeney, Anton I. Petrov, Caeden D. Meade, David Hoksza, Carlos Eduardo Ribas, Robert D. Finn, Loren Dean Williams, Anton S. Petrov, Fábio Madeira
Publikováno v:
Nature Communications
Nature Communications, Vol 12, Iss 1, Pp 1-12 (2021)
Nature Communications, Vol 12, Iss 1, Pp 1-12 (2021)
Non-coding RNAs (ncRNA) are essential for all life, and their functions often depend on their secondary (2D) and tertiary structure. Despite the abundance of software for the visualisation of ncRNAs, few automatically generate consistent and recognis
Publikováno v:
RNA
None.
Autor:
Alex Bateman, Dimitra Karagkouni, Robin R. Gutell, Lina Ma, Ruth C. Lovering, Prita Mani, Artemis G. Hatzigeorgiou, Pieter-Jan Volders, Elspeth A. Bruford, Simon Kay, Kevin J. Peterson, Lauren M. Lui, Steven J Marygold, Todd M. Lowe, Jamie J. Cannone, Anton S. Petrov, Patricia P. Chan, Robert D. Finn, Adam Frankish, Stefan E. Seemann, David Hoksza, Bastian Fromm, Ioanna Kalvari, Maciej Szymanski, Ruth L. Seal, Ruth Barshir, Pieter Mestdagh, Simona Panni, Carlos Eduardo Ribas, Michelle S. Scott, Pablo Porras, Simon Fishilevich, Anton I. Petrov, Sam Griffiths-Jones, Blake A. Sweeney, Zhang Zhang, Jonathan M. Mudge, Zasha Weinberg, Sridhar Ramachandran, Jan Gorodkin, Shuai Weng, Eric P. Nawrocki, Wojciech M. Karlowski, Barbara Kramarz, Philia Bouchard-Bourelle, Gil dos Santos
Publikováno v:
Sweeney, B A, Petrov, A I, Ribas, C E, Finn, R D, Bateman, A, Szymanski, M, Karlowski, W M, Seemann, S E, Gorodkin, J, Cannone, J J, Gutell, R R, Kay, S, Marygold, S, Dos Santos, G, Frankish, A, Mudge, J M, Barshir, R, Fishilevich, S, Chan, P P, Lowe, T M, Seal, R, Bruford, E, Panni, S, Porras, P, Karagkouni, D, Hatzigeorgiou, A G, Ma, L, Zhang, Z, Volders, P J, Mestdagh, P, Griffiths-Jones, S, Fromm, B, Peterson, K J, Kalvari, I, Nawrocki, E P, Petrov, A S, Weng, S, Bouchard-Bourelle, P, Scott, M, Lui, L M, Hoksza, D, Lovering, R C, Kramarz, B, Mani, P, Ramachandran, S & Weinberg, Z 2021, ' RNAcentral 2021 : Secondary structure integration, improved sequence search and new member databases ', Nucleic Acids Research, vol. 49, no. D1, pp. D212-D220 . https://doi.org/10.1093/nar/gkaa921
NUCLEIC ACIDS RESEARCH
Nucleic Acids Research
NUCLEIC ACIDS RESEARCH
Nucleic Acids Research
RNAcentral is a comprehensive database of non-coding RNA (ncRNA) sequences that provides a single access point to 44 RNA resources and >18 million ncRNA sequences from a wide range of organisms and RNA types. RNAcentral now also includes secondary (2
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8e19e03b750a9a147992e2137ae30e05
https://curis.ku.dk/ws/files/259671035/gkaa921.pdf
https://curis.ku.dk/ws/files/259671035/gkaa921.pdf
Autor:
Joanna Argasinska, Sean R. Eddy, Ioanna Kalvari, Elena Rivas, Anton I. Petrov, Kevin Lamkiewicz, Alex Bateman, Robert D. Finn, Daniel Gautheret, Sam Griffiths-Jones, Manja Marz, Nancy Ontiveros-Palacios, Eric P. Nawrocki, Zasha Weinberg, Claire Toffano-Nioche
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, 2020, ⟨10.1093/nar/gkaa1047⟩
Nucleic Acids Research, 2020, ⟨10.1093/nar/gkaa1047⟩
Rfam is a database of RNA families where each of the 3444 families is represented by a multiple sequence alignment of known RNA sequences and a covariance model that can be used to search for additional members of the family. Recent developments have
Autor:
Fábio Madeira, Aparna Maddala, Patricia P. Chan, Caeden D. Meade, David Hoksza, Loren Dean Williams, Blake A. Sweeney, Robert D. Finn, Jamie J. Cannone, Eric P. Nawrocki, Anton S. Petrov, Todd M. Lowe, Anton I. Petrov, Robin R. Gutell, Carlos Eduardo Ribas
Non-coding RNAs (ncRNA) are essential for all life, and the functions of many ncRNAs depend on their secondary (2D) and tertiary (3D) structure. Despite proliferation of 2D visualisation software, there is a lack of methods for automatically generati
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::98ddc5283e49f0032e15c05c5a04e96d
https://doi.org/10.1101/2020.09.10.290924
https://doi.org/10.1101/2020.09.10.290924
Autor:
Alex Bateman, Robert D. Finn, Blake A. Sweeney, Anton I. Petrov, Arina A. Tagmazian, Carlos Eduardo Ribas
Publikováno v:
Current Protocols in Bioinformatics. 71
Non-coding RNAs are essential for all life and carry out a wide range of functions. Information about these molecules is distributed across dozens of specialized resources. RNAcentral is a database of non-coding RNA sequences that provides a unified
Autor:
Denise Kühnert, Vincent Navratil, Roman Martin, Marius Welzel, Franziska Hufsky, Guillermo Rangel-Pineros, Marie Hoffmann, Julian Matschinske, Robert D. Finn, Manja Marz, Hannah F. Löchel, Georges Hattab, Jan Baumbach, Stefan Hoops, Alice C. McHardy, Pedro Mendes, Kevin Lamkiewicz, Niko Beerenwinkel, Ioanna Kalvari, Joshua B Singer, Maria Jesus Martin, David Robertson, Jaina Mistry, Alexandre Almeida, Chris Upton, Markus List, Sara Chuguransky, Cecilia N. Arighi, Oliver Drechsel, Nicole Redaschi, Dominik Heider, Alex Bateman, Lorna Richardson, Christian Brandt, Pieter Libin, Adrian Fritz, Anton I. Petrov, Lars Kaderali, Knut Reinert, Lowri Williams, Max von Kleist, Áine O'Toole, Abdel Aouacheria, Martin Hölzer, Nancy Ontiveros-Palacios, Susanne Reimering, Kristof Theys, Stephan Fuchs, Anne-Christin Hauschild, Sepideh Sadegh, Gorka Lasso, Marco Cacciabue, Eric P. Nawrocki, Alejandro Reyes, Renó Kmiecinski
Publikováno v:
Briefings in Bioinformatics
Briefings in Bioinformatics, Oxford University Press (OUP), 2020, ⟨10.1093/bib/bbaa232⟩
Preprints
Briefings in bioinformatics
England
Hufsky, F, Lamkiewicz, K, Almeida, A, Aouacheria, A, Arighi, C, Bateman, A, Baumbach, J, Beerenwinkel, N, Brandt, C, Cacciabue, M, Chuguransky, S, Drechsel, O, Finn, R D, Fritz, A, Fuchs, S, Hattab, G, Hauschild, A-C, Heider, D, Hoffmann, M, Hölzer, M, Hoops, S, Kaderali, L, Kalvari, I, von Kleist, M, Kmiecinski, R, Kühnert, D, Lasso, G, Libin, P, List, M, Löchel, H F, Martin, M J, Martin, R, Matschinske, J, McHardy, A C, Mendes, P, Mistry, J, Navratil, V, Nawrocki, E P, O'Toole, A N, Ontiveros-Palacios, N, Petrov, A I, Rangel-Pineros, G, Redaschi, N, Reimering, S, Reinert, K, Reyes, A, Richardson, L, Robertson, D L, Sadegh, S, Singer, J B, Theys, K, Upton, C, Welzel, M, Williams, L & Marz, M 2021, ' Computational strategies to combat COVID-19 : useful tools to accelerate SARS-CoV-2 and coronavirus research ', Briefings in Bioinformatics, vol. 22, no. 2, pp. 642-663 . https://doi.org/10.1093/bib/bbaa232
Briefings in Bioinformatics, 22 (2)
CONICET Digital (CONICET)
Consejo Nacional de Investigaciones Científicas y Técnicas
instacron:CONICET
Preprints.org
Briefings in Bioinformatics, 2020, ⟨10.1093/bib/bbaa232⟩
Briefings in Bioinformatics, Oxford University Press (OUP), 2020, ⟨10.1093/bib/bbaa232⟩
Preprints
Briefings in bioinformatics
England
Hufsky, F, Lamkiewicz, K, Almeida, A, Aouacheria, A, Arighi, C, Bateman, A, Baumbach, J, Beerenwinkel, N, Brandt, C, Cacciabue, M, Chuguransky, S, Drechsel, O, Finn, R D, Fritz, A, Fuchs, S, Hattab, G, Hauschild, A-C, Heider, D, Hoffmann, M, Hölzer, M, Hoops, S, Kaderali, L, Kalvari, I, von Kleist, M, Kmiecinski, R, Kühnert, D, Lasso, G, Libin, P, List, M, Löchel, H F, Martin, M J, Martin, R, Matschinske, J, McHardy, A C, Mendes, P, Mistry, J, Navratil, V, Nawrocki, E P, O'Toole, A N, Ontiveros-Palacios, N, Petrov, A I, Rangel-Pineros, G, Redaschi, N, Reimering, S, Reinert, K, Reyes, A, Richardson, L, Robertson, D L, Sadegh, S, Singer, J B, Theys, K, Upton, C, Welzel, M, Williams, L & Marz, M 2021, ' Computational strategies to combat COVID-19 : useful tools to accelerate SARS-CoV-2 and coronavirus research ', Briefings in Bioinformatics, vol. 22, no. 2, pp. 642-663 . https://doi.org/10.1093/bib/bbaa232
Briefings in Bioinformatics, 22 (2)
CONICET Digital (CONICET)
Consejo Nacional de Investigaciones Científicas y Técnicas
instacron:CONICET
Preprints.org
Briefings in Bioinformatics, 2020, ⟨10.1093/bib/bbaa232⟩
SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) is a novel virus of the family Coronaviridae. The virus causesthe infectious disease COVID-19. The biology of coronaviruses has been studied for many years. However, bioinformaticstools des
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7cc1ebc9849708c6b19e128f12d7c8fc