Zobrazeno 1 - 10
of 27
pro vyhledávání: '"Anthony Fullam"'
Autor:
Askarbek Orakov, Anthony Fullam, Luis Pedro Coelho, Supriya Khedkar, Damian Szklarczyk, Daniel R. Mende, Thomas S. B. Schmidt, Peer Bork
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-19 (2021)
Abstract Genomes are critical units in microbiology, yet ascertaining quality in prokaryotic genome assemblies remains a formidable challenge. We present GUNC (the Genome UNClutterer), a tool that accurately detects and quantifies genome chimerism ba
Externí odkaz:
https://doaj.org/article/34648596e6014e92a141c38319336404
Autor:
Lore Van Espen, Emilie Glad Bak, Leen Beller, Lila Close, Ward Deboutte, Helene Bæk Juel, Trine Nielsen, Deniz Sinar, Lander De Coninck, Christine Frithioff-Bøjsøe, Cilius Esmann Fonvig, Suganya Jacobsen, Maria Kjærgaard, Maja Thiele, Anthony Fullam, Michael Kuhn, Jens-Christian Holm, Peer Bork, Aleksander Krag, Torben Hansen, Manimozhiyan Arumugam, Jelle Matthijnssens
Publikováno v:
mSystems, Vol 6, Iss 5 (2021)
ABSTRACT Gut viruses are important, yet often neglected, players in the complex human gut microbial ecosystem. Recently, the number of human gut virome studies has been increasing; however, we are still only scratching the surface of the immense vira
Externí odkaz:
https://doaj.org/article/8c16f8759bf740f9bd1c21aeaa78c976
Autor:
Francesco Maura, Niccoló Bolli, Nicos Angelopoulos, Kevin J. Dawson, Daniel Leongamornlert, Inigo Martincorena, Thomas J. Mitchell, Anthony Fullam, Santiago Gonzalez, Raphael Szalat, Federico Abascal, Bernardo Rodriguez-Martin, Mehmet Kemal Samur, Dominik Glodzik, Marco Roncador, Mariateresa Fulciniti, Yu Tzu Tai, Stephane Minvielle, Florence Magrangeas, Philippe Moreau, Paolo Corradini, Kenneth C. Anderson, Jose M. C. Tubio, David C. Wedge, Moritz Gerstung, Hervé Avet-Loiseau, Nikhil Munshi, Peter J. Campbell
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-12 (2019)
Multiple myeloma evolves continuously. Here the authors chronologically reconstruct driver events in multiple myeloma, noting a limited repertoire of initiating driver events that shape the evolutionary trajectory of the disease.
Externí odkaz:
https://doaj.org/article/a38608a486ef471e8da57b4ab94d19b3
Autor:
Niccolò Bolli, Francesco Maura, Stephane Minvielle, Dominik Gloznik, Raphael Szalat, Anthony Fullam, Inigo Martincorena, Kevin J. Dawson, Mehmet Kemal Samur, Jorge Zamora, Patrick Tarpey, Helen Davies, Mariateresa Fulciniti, Masood A. Shammas, Yu Tzu Tai, Florence Magrangeas, Philippe Moreau, Paolo Corradini, Kenneth Anderson, Ludmil Alexandrov, David C. Wedge, Herve Avet-Loiseau, Peter Campbell, Nikhil Munshi
Publikováno v:
Nature Communications, Vol 9, Iss 1, Pp 1-10 (2018)
Smoldering MM (SMM) is a premalignant stage of multiple myeloma (MM). Here the authors perform whole genome sequencing of unique paired samples of SMM progressing to MM, and show that the genomic landscape at the SMM stage is very similar to MM, but
Externí odkaz:
https://doaj.org/article/7915841302254896b2f39285aed1718f
EasyBuild is a community effort to develop a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way. As its name suggests, EasyBuild makes software ins
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::213ad8b7a8133c3df0b56d278b5df7c0
https://doi.org/10.37044/osf.io/vn4dx
https://doi.org/10.37044/osf.io/vn4dx
Autor:
Pamela Ferretti, Jakob Wirbel, Oleksandr M Maistrenko, Thea Van Rossum, Renato Alves, Anthony Fullam, Wasiu Akanni, Christian Schudoma, Anna Schwarz, Roman Thielemann, Leonie Thomas, Stefanie Kandels, Rajna Hercog, Anja Telzerow, Ivica Letunic, Michael Kuhn, Georg Zeller, Thomas SB Schmidt, Peer Bork
SummaryClostridioides difficile infection (CDI) is an urgent threat in nosocomial infections, yet its associated microbiome remains poorly characterised. Among 534 metagenomes from 10 public CDI study populations we detected C. difficile in only 30%
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::90907c579838fbbad25f4c7b9bc73e1c
https://doi.org/10.1101/2022.02.16.480740
https://doi.org/10.1101/2022.02.16.480740
Autor:
Thomas S. B. Schmidt, Simone S. Li, Oleksandr M. Maistrenko, Wasiu Akanni, Luis Pedro Coelho, Sibasish Dolai, Anthony Fullam, Anna M. Glazek, Rajna Hercog, Hilde Herrema, Ferris Jung, Stefanie Kandels, Askarbek Orakov, Roman Thielemann, Moritz von Stetten, Thea Van Rossum, Vladimir Benes, Thomas J. Borody, Willem M. de Vos, Cyriel Y. Ponsioen, Max Nieuwdorp, Peer Bork
Publikováno v:
Nature Medicine 28 (2022) 9
Schmidt, T S B, Li, S S, Maistrenko, O M, Akanni, W, Coelho, L P, Dolai, S, Fullam, A, Glazek, A M, Hercog, R, Herrema, H, Jung, F, Kandels, S, Orakov, A, Thielemann, R, von Stetten, M, Van Rossum, T, Benes, V, Borody, T J, de Vos, W M, Ponsioen, C Y, Nieuwdorp, M & Bork, P 2022, ' Drivers and determinants of strain dynamics following fecal microbiota transplantation ', Nature Medicine, vol. 28, no. 9, pp. 1902-1912 . https://doi.org/10.1038/s41591-022-01913-0
Nature medicine, 28(9), 1902-1912. Nature Publishing Group
Schmidt, T S B, Li, S S, Maistrenko, O M, Akanni, W, Coelho, L P, Dolai, S, Fullam, A, Glazek, A M, Hercog, R, Herrema, H, Jung, F, Kandels, S, Orakov, A, Thielemann, R, von Stetten, M, van Rossum, T, Benes, V, Borody, T J, de Vos, W M, Ponsioen, C Y, Nieuwdorp, M & Bork, P 2022, ' Drivers and determinants of strain dynamics following fecal microbiota transplantation ', Nature Medicine, vol. 28, no. 9, pp. 1902-1912 . https://doi.org/10.1038/s41591-022-01913-0
Nature Medicine, 28(9), 1902-1912. Nature Publishing Group
Nature Medicine, 28(9), 1902-1912
Schmidt, T S B, Li, S S, Maistrenko, O M, Akanni, W, Coelho, L P, Dolai, S, Fullam, A, Glazek, A M, Hercog, R, Herrema, H, Jung, F, Kandels, S, Orakov, A, Thielemann, R, von Stetten, M, Van Rossum, T, Benes, V, Borody, T J, de Vos, W M, Ponsioen, C Y, Nieuwdorp, M & Bork, P 2022, ' Drivers and determinants of strain dynamics following fecal microbiota transplantation ', Nature Medicine, vol. 28, no. 9, pp. 1902-1912 . https://doi.org/10.1038/s41591-022-01913-0
Nature medicine, 28(9), 1902-1912. Nature Publishing Group
Schmidt, T S B, Li, S S, Maistrenko, O M, Akanni, W, Coelho, L P, Dolai, S, Fullam, A, Glazek, A M, Hercog, R, Herrema, H, Jung, F, Kandels, S, Orakov, A, Thielemann, R, von Stetten, M, van Rossum, T, Benes, V, Borody, T J, de Vos, W M, Ponsioen, C Y, Nieuwdorp, M & Bork, P 2022, ' Drivers and determinants of strain dynamics following fecal microbiota transplantation ', Nature Medicine, vol. 28, no. 9, pp. 1902-1912 . https://doi.org/10.1038/s41591-022-01913-0
Nature Medicine, 28(9), 1902-1912. Nature Publishing Group
Nature Medicine, 28(9), 1902-1912
Fecal microbiota transplantation (FMT) is a therapeutic intervention for inflammatory diseases of the gastrointestinal tract, but its clinical mode of action and subsequent microbiome dynamics remain poorly understood. Here we analyzed metagenomes fr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6f09ad90a73d39d876c5bd9ef143f308
https://research.wur.nl/en/publications/drivers-and-determinants-of-strain-dynamics-following-fecal-micro
https://research.wur.nl/en/publications/drivers-and-determinants-of-strain-dynamics-following-fecal-micro
Autor:
Anthony Fullam, Ivica Letunic, Thomas S B Schmidt, Quinten R Ducarmon, Nicolai Karcher, Supriya Khedkar, Michael Kuhn, Martin Larralde, Oleksandr M Maistrenko, Lukas Malfertheiner, Alessio Milanese, Joao Frederico Matias Rodrigues, Claudia Sanchis-López, Christian Schudoma, Damian Szklarczyk, Shinichi Sunagawa, Georg Zeller, Jaime Huerta-Cepas, Christian von Mering, Peer Bork, Daniel R Mende
Publikováno v:
Nucleic acids research, 51(D1), D760-D766. Oxford University Press
Nucleic Acids Research, 51 (D1)
Nucleic Acids Research, 51 (D1)
7 Pág.
The interpretation of genomic, transcriptomic and other microbial 'omics data is highly dependent on the availability of well-annotated genomes. As the number of publicly available microbial genomes continues to increase exponentially, t
The interpretation of genomic, transcriptomic and other microbial 'omics data is highly dependent on the availability of well-annotated genomes. As the number of publicly available microbial genomes continues to increase exponentially, t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::96ceca1546f3e14bdfc0586a783af884
https://www.vliz.be/imisdocs/publications/34/386734.pdf
https://www.vliz.be/imisdocs/publications/34/386734.pdf
Autor:
Maria Kjærgaard, Leen Beller, Lila Close, Cilius Esmann Fonvig, Torben Hansen, Ward Deboutte, Manimozhiyan Arumugam, Peer Bork, Jens-Christian Holm, Michael Kuhn, Anthony Fullam, Deniz Sinar, Suganya Jacobsen, Jelle Matthijnssens, Maja Thiele, Lore Van Espen, Christine Frithioff-Bøjsøe, Emilie Glad Bak, Helene Bæk Juel, Trine Nielsen, Lander De Coninck, Aleksander Krag
Publikováno v:
mSystems
Van Espen, L, Bak, E G, Beller, L, Close, L, Deboutte, W, Juel, H B, Nielsen, T, Sinar, D, De Coninck, L, Frithioff-Bøjsøe, C, Fonvig, C E, Jacobsen, S, Kjærgaard, M, Thiele, M, Fullam, A, Kuhn, M, Holm, J C, Bork, P, Krag, A, Hansen, T, Arumugam, M & Matthijnssens, J 2021, ' A Previously Undescribed Highly Prevalent Phage Identified in a Danish Enteric Virome Catalog ', mSystems, vol. 6, no. 5, e00382-21 . https://doi.org/10.1128/mSystems.00382-21
mSystems, Vol 6, Iss 5 (2021)
Van Espen, L, Bak, E G, Beller, L, Close, L, Deboutte, W, Juel, H B, Nielsen, T, Sinar, D, De Coninck, L, Frithioff-Bøjsøe, C, Fonvig, C E, Jacobsen, S, Kjærgaard, M, Thiele, M, Fullam, A, Kuhn, M, Holm, J C, Bork, P, Krag, A, Hansen, T, Arumugam, M & Matthijnssens, J 2021, ' A Previously Undescribed Highly Prevalent Phage Identified in a Danish Enteric Virome Catalog ', mSystems, vol. 6, no. 5, e00382-21 . https://doi.org/10.1128/mSystems.00382-21
mSystems, Vol 6, Iss 5 (2021)
Gut viruses are important, yet often neglected, players in the complex human gut microbial ecosystem. Recently, the number of human gut virome studies has been increasing; however, we are still only scratching the surface of the immense viral diversi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::eda3673985e8d4b3e13f91dd7759c997
https://lirias.kuleuven.be/handle/123456789/684261
https://lirias.kuleuven.be/handle/123456789/684261
Autor:
Akkani W, Anthony Fullam, Benes, Luis Pedro Coelho, Ponsioen Cy, Dolai S, Glazek A, Shanshan Li, Van Rossum T, Rajna Hercog, Askarbek Nurlanuly Orakov, Thomas J. Borody, Oleksandr M. Maistrenko, Peer Bork, Hilde Herrema, Max Nieuwdorp, Stefanie Kandels, de Vos Wm, Thomas Schmidt, Jung F
Faecal microbiota transplantation (FMT) is an efficacious therapeutic intervention, but its clinical mode of action and underlying microbiome dynamics remain poorly understood. Here, we analysed the metagenomes associated with 142 FMTs, in a time ser
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::be9393a1c37e2aba4131ebfcb88ae6d2
https://doi.org/10.1101/2021.09.30.462010
https://doi.org/10.1101/2021.09.30.462010