Microscopic phage adsorption assay: High-throughput quantification of virus particle attachment to host bacterial cells.

Autor: Antani JD; Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06520.; Center for Phage Biology & Therapy, Yale University, New Haven, CT 06520.; Quantitative Biology Institute, Yale University, New Haven, CT 06520., Ward T; Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06520., Emonet T; Quantitative Biology Institute, Yale University, New Haven, CT 06520.; Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06520.; Department of Physics, Yale University, New Haven, CT 06520., Turner PE; Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06520.; Center for Phage Biology & Therapy, Yale University, New Haven, CT 06520.; Quantitative Biology Institute, Yale University, New Haven, CT 06520.; Program in Microbiology, Yale School of Medicine, New Haven, CT 06520.

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2024 Dec 24; Vol. 121 (52), pp. e2410905121. Date of Electronic Publication: 2024 Dec 19.

Reassessing the Standard Chemotaxis Framework for Understanding Biased Migration in Helicobacter pylori .

Autor: Antani JD; Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, Texas, USA; email: aakanshashaji@tamu.edu, rachitgupta@tamu.edu, plele@tamu.edu.; Current affiliation: Department of Ecology and Evolutionary Biology, Center for Phage Biology & Therapy, and Quantitative Biology Institute, Yale University, New Haven, Connecticut, USA; email: jyot.antani@yale.edu., Shaji A; Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, Texas, USA; email: aakanshashaji@tamu.edu, rachitgupta@tamu.edu, plele@tamu.edu., Gupta R; Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, Texas, USA; email: aakanshashaji@tamu.edu, rachitgupta@tamu.edu, plele@tamu.edu., Lele PP; Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, Texas, USA; email: aakanshashaji@tamu.edu, rachitgupta@tamu.edu, plele@tamu.edu.; Department of Biomedical Engineering, Texas A&M University, College Station, Texas, USA.

Publikováno v: Annual review of chemical and biomolecular engineering [Annu Rev Chem Biomol Eng] 2024 Jul; Vol. 15 (1), pp. 51-62. Date of Electronic Publication: 2024 Jul 03.

The Nucleus Bypasses Obstacles by Deforming Like a Drop with Surface Tension Mediated by Lamin A/C.

Autor: Katiyar A; Department of Biomedical Engineering, Texas A&M University, 101 Bizzell St., College Station, TX, 77843, USA., Zhang J; Department of Biomedical Engineering, Vanderbilt University, 2301 Vanderbilt Place, Nashville, TN, 37235, USA., Antani JD; Artie McFerrin Department of Chemical Engineering, Texas A&M University, 3122 TAMU, College Station, TX, 77843, USA., Yu Y; Department of Chemical Engineering, University of Florida, 1030 Center Drive, Gainesville, FL, 32611, USA., Scott KL; Enabling Technologies Group, Sanford Research, 2301 East 60th St N, Sioux Falls, SD, 57104, USA., Lele PP; Artie McFerrin Department of Chemical Engineering, Texas A&M University, 3122 TAMU, College Station, TX, 77843, USA., Reinhart-King CA; Department of Biomedical Engineering, Vanderbilt University, 2301 Vanderbilt Place, Nashville, TN, 37235, USA., Sniadecki NJ; Department of Mechanical Engineering, Department of Lab Medicine and Pathology, Institute for Stem Cell and Regenerative Medicine, Center for Cardiac Biology, University of Washington, Stevens Way, Box 352600, Seattle, WA, 98195, USA., Roux KJ; Enabling Technologies Group, Sanford Research, 2301 East 60th St N, Sioux Falls, SD, 57104, USA.; Department of Pediatrics, Sanford School of Medicine, University of South Dakota, 414 E Clark St, Vermillion, SD, 57069, USA., Dickinson RB; Department of Chemical Engineering, University of Florida, 1030 Center Drive, Gainesville, FL, 32611, USA., Lele TP; Department of Biomedical Engineering, Texas A&M University, 101 Bizzell St., College Station, TX, 77843, USA.; Artie McFerrin Department of Chemical Engineering, Texas A&M University, 3122 TAMU, College Station, TX, 77843, USA.; Department of Translational Medical Sciences, Texas A&M University, 2121 W Holcombe St., Houston, TX, 77030, USA.

Publikováno v: Advanced science (Weinheim, Baden-Wurttemberg, Germany) [Adv Sci (Weinh)] 2022 Aug; Vol. 9 (23), pp. e2201248. Date of Electronic Publication: 2022 Jun 16.

Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation.

Autor: Wong GCL; Department of Bioengineering, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America.; Department of Chemistry and Biochemistry, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America.; California NanoSystems Institute, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America., Antani JD; Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, TX 77843, United States of America., Lele PP; Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, TX 77843, United States of America., Chen J; Department of Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA24061, United States of America., Nan B; Department of Biology, Texas A&M University, College Station, Texas, TX 77845, United States of America., Kühn MJ; Institute of Bioengineering and Global Health Institute, School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland., Persat A; Institute of Bioengineering and Global Health Institute, School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland., Bru JL; Department of Molecular Biology & Biochemistry, University of California-Irvine, California, CA 92697, United States of America., Høyland-Kroghsbo NM; Department of Plant and Environmental Sciences, University of Copenhagen, DK-1871 Frederiksberg, Denmark., Siryaporn A; Department of Molecular Biology & Biochemistry, University of California-Irvine, California, CA 92697, United States of America.; Department of Physics & Astronomy, University of California-Irvine, California, CA 92697, United States of America., Conrad JC; William A Brookshire Department of Chemical and Biomolecular Engineering, University of Houston, Houston, Texas, TX 77204, United States of America., Carrara F; Institute of Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, 8093 Zurich, Switzerland., Yawata Y; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki 305-8572, Japan.; Microbiology Research Center for Sustainability, University of Tsukuba, 305-8572 Tsukuba, Japan., Stocker R; Institute of Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, 8093 Zurich, Switzerland., V Brun Y; University of Montreal, Faculty of Medicine, Montreal, Quebec, H3C 3J7, Canada., Whitfield GB; University of Montreal, Faculty of Medicine, Montreal, Quebec, H3C 3J7, Canada., Lee CK; Department of Bioengineering, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America.; Department of Chemistry and Biochemistry, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America.; California NanoSystems Institute, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America., de Anda J; Department of Bioengineering, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America.; Department of Chemistry and Biochemistry, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America.; California NanoSystems Institute, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America., Schmidt WC; Department of Bioengineering, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America.; Department of Chemistry and Biochemistry, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America.; California NanoSystems Institute, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America., Golestanian R; Max Planck Institute for Dynamics and Self-Organization (MPIDS), D-37077 Göttingen, Germany.; Rudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford OX1 3PU, United Kingdom., O'Toole GA; Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, NH 03755, United States of America., Floyd KA; Department of Microbiology and Environmental Toxicology, University of California-Santa Cruz, Santa Cruz, California, CA 95060, United States of America., Yildiz FH; Department of Microbiology and Environmental Toxicology, University of California-Santa Cruz, Santa Cruz, California, CA 95060, United States of America., Yang S; CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, People's Republic of China., Jin F; CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, People's Republic of China., Toyofuku M; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki 305-8572, Japan.; Microbiology Research Center for Sustainability, University of Tsukuba, 305-8572 Tsukuba, Japan., Eberl L; Department of Plant and Microbial Biology, University of Zürich, 8008 Zürich, Switzerland., Nomura N; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki 305-8572, Japan.; Microbiology Research Center for Sustainability, University of Tsukuba, 305-8572 Tsukuba, Japan., Zacharoff LA; Department of Physics and Astronomy, University of Southern California, Los Angeles, California, CA 90089, United States of America.; Department of Chemistry, University of Southern California, Los Angeles, California, CA 90089, United States of America., El-Naggar MY; Department of Physics and Astronomy, University of Southern California, Los Angeles, California, CA 90089, United States of America.; Department of Chemistry, University of Southern California, Los Angeles, California, CA 90089, United States of America.; Department of Biological Sciences, University of Southern California, Los Angeles, California, CA 90089, United States of America., Yalcin SE; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, CT 06516, United States of America.; Microbial Sciences Institute, Yale University, New Haven, Connecticut, CT 06516, United States of America., Malvankar NS; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, CT 06516, United States of America.; Microbial Sciences Institute, Yale University, New Haven, Connecticut, CT 06516, United States of America., Rojas-Andrade MD; Department of Materials Science and Engineering, University of California-Irvine, Irvine, California CA 92697, United States of America., Hochbaum AI; Department of Molecular Biology & Biochemistry, University of California-Irvine, California, CA 92697, United States of America.; Department of Materials Science and Engineering, University of California-Irvine, Irvine, California CA 92697, United States of America.; Department of Chemistry, University of California-Irvine, Irvine, California, CA 92697, United States of America.; Department of Chemical and Biomolecular Engineering, University of California-Irvine, Irvine, California, CA 92697, United States of America., Yan J; Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, CT 06511, United States of America., Stone HA; Department of Mechanical and Aerospace Engineering, Princeton University, Princeton, New Jersey, NJ 08544, United States of America., Wingreen NS; Department of Molecular Biology, Princeton University, Princeton, New Jersey, NJ 08544, United States of America.; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, NJ 08544, United States of America., Bassler BL; Department of Molecular Biology, Princeton University, Princeton, New Jersey, NJ 08544, United States of America.; The Howard Hughes Medical Institute, Chevy Chase, Maryland MD 20815, United States of America., Wu Y; Department of Physics and Shenzhen Research Institute, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, People's Republic of China., Xu H; Department of Physics and Shenzhen Research Institute, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, People's Republic of China., Drescher K; Max Planck Institute for Terrestrial Microbiology, 35043 Marburg, Germany.; Department of Physics, Philipps-Universität Marburg, 35043 Marburg, Germany., Dunkel J; Department of Mathematics, Massachusetts Institute of Technology, Cambridge, Massachusetts, MA 02139-4307, United States of America.

Publikováno v: Physical biology [Phys Biol] 2021 Jun 23; Vol. 18 (5). Date of Electronic Publication: 2021 Jun 23.

Asymmetric random walks reveal that the chemotaxis network modulates flagellar rotational bias in Helicobacter pylori .

Autor: Antani JD; Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, TX 77843, United States., Sumali AX; Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, TX 77843, United States., Lele TP; Department of Biomedical Engineering, Texas A&M University, College Station, TX 77840, College Station, TX 77840, United States.; Department of Translational Medical Sciences, Texas A&M University, Houston, TX 77030, United States., Lele PP; Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, TX 77843, United States.

Publikováno v: ELife [Elife] 2021 Jan 25; Vol. 10. Date of Electronic Publication: 2021 Jan 25.