Zobrazeno 1 - 10 of 15 pro vyhledávání: '"Annie Gendrault"'
1
Synchronized navigation and comparative analyses across Ensembl complete bacterial genomes with INSYGHT
Autor: Annie Gendrault, Sylvie Thérond, Pierre Nicolas, Marc Rugeri, Valentin Loux, Jean-François Gibrat, Thomas Lacroix
Publikováno v: Bioinformatics
Bioinformatics, Oxford University Press (OUP), 2016, 32 (7), pp.1083-1084. ⟨10.1093/bioinformatics/btv689⟩
Motivation: High-throughput sequencing technologies provide access to an increasing number of bacterial genomes. Today, many analyses involve the comparison of biological properties among many strains of a given species, or among species of a particu
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0631114555f8619c0a48f2582a6b0eed
https://hal.inrae.fr/hal-02630699
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2
Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii
Autor: Gwénaël Jan, Jean-Marc Aury, Valérie Barbe, Valentin Loux, Sandrine Parayre, Amal Hammani, Yves Le Loir, Annie Gendrault, Hélène Chiapello, Mahendra Mariadassou, Pierre Peterlongo, Hélène Falentin, Julien Buratti, Victoria Chuat, Sintia Almeida, Marie-Noelle Madec, Vasco Azevedo, Stéphanie-Marie Deutsch
Publikováno v: BMC Genomics
BMC Genomics, 2015, 16 (1), pp.35. ⟨10.1186/s12864-015-1467-7⟩
20. Colloque du Club des Bactéries Lactiques
20. Colloque du Club des Bactéries Lactiques, Jun 2015, Lille, France. 2015
BMC Genomics, BioMed Central, 2015, 16 (1), pp.35. ⟨10.1186/s12864-015-1467-7⟩
20. Colloque du Club des Bactéries Lactiques, Jun 2015, Lille, France., 2015
BMC Genomics 216 (16), 1-19. (2015)
Colloque organisé par : Pr. Catherine Béal - UFR Technologie et Procédés Alimentaires - AgroParisTech Dr. Luis Bermudez - MICALIS - Institut National de la Recherche Agronomique Dr. Marie-Christine Champomier-Verges - MICALIS - Institut National
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::968a52ec645fa7bb714fb8a2ea0bd457
https://inria.hal.science/hal-01142363/file/s12864-015-1467-7.pdf
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3
Finding candidate genes under positive selection in Non-model species: examples of genes involved in host specialization in pathogens
Autor: Elodie Vercken, Corinne Cruaud, Gabriela Aguileta, Annie Gendrault, Michael C. Fontaine, Tatiana Giraud, J Lengelle, Benjamin Devier, Arnaud Couloux, Sylvain Marthey, Roxana Yockteng, Hélène Chiapello, Carole Dossat, François Rodolphe, Patrick Wincker
Publikováno v: Molecular Ecology. 19:292-306
Numerous genes in diverse organisms have been shown to be under positive selection, especially genes involved in reproduction, adaptation to contrasting environments, hybrid inviability, and host-pathogen interactions. Looking for genes under positiv
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::6211bb006df3b10fd362740e3961fde2
https://doi.org/10.1111/j.1365-294x.2009.04454.x
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4
Insyght: navigating amongst abundant homologues, syntenies and gene functional annotations in bacteria, it's that symbol!
Autor: Valentin Loux, Jean-François Gibrat, Annie Gendrault, Thomas Lacroix, Mark Hoebeke
Publikováno v: Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2014, 42 (21), pp.e162. ⟨10.1093/nar/gku867⟩
Nucleic Acids Research 21 (42), 1-9. (2014)
Nucleic Acids Research, 2014, 42 (21), pp.e162. ⟨10.1093/nar/gku867⟩
article online : Received February 21, 2013; Revised August 28, 2014; Accepted September 10, 2014; International audience; High-throughput techniques have considerably increased the potential of comparative genomics whilst simultaneously posing many
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::adebc9957b604dc1b2e2772d7fec6e35
https://hal.sorbonne-universite.fr/hal-01332638
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5
Genes under positive selection in a model plant pathogenic fungus, Botrytis
Autor: Elisabeth Fournier, Patrick Wincker, Hélène Chiapello, Sylvain Marthey, Annie Gendrault, Aurélie Ducasse, Julie Poulain, Gabriela Aguileta, François Rodolphe, Juliette Lengelle, Lilian Gout, Muriel Viaud, Tatiana Giraud
Publikováno v: Infection, Genetics and Evolution
Infection, Genetics and Evolution, Elsevier, 2012, 12 (05), pp.987-996. ⟨10.1016/j.meegid.2012.02.012⟩
Infection, Genetics and Evolution, 2012, 12 (05), pp.987-996. ⟨10.1016/j.meegid.2012.02.012⟩
The rapid evolution of particular genes is essential for the adaptation of pathogens to new hosts and new environments. Powerful methods have been developed for detecting targets of selection in the genome. Here we used divergence data to compare gen
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1765d2be49b3952df9ca92807584e8c0
https://hal.archives-ouvertes.fr/hal-01000313
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6
Genome sequence of the persistent Salmonella enterica subsp enterica Serotype Senftenberg Strain SS209
Autor: Olivier Grépinet, Philippe Velge, Zineb Boumart, Annie Gendrault, Isabelle Virlogeux-Payant, Hélène Chiapello, Jean-François Gibrat, Valentin Loux, Marianne Chemaly
Publikováno v: Journal of Bacteriology
Journal of Bacteriology, American Society for Microbiology, 2012, 194 (9), pp.2385-2386. ⟨10.1128/JB.00255-12⟩
Salmonella enterica subsp. enterica serotype Senftenberg is an emerging serotype in poultry production which has been found to persist in animals and the farm environment. We report the genome sequence and annotation of the SS209 strain of S . Senfte
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::43377418ad26f74aa0665e4af7efe136
https://hal.inrae.fr/hal-02643377
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7
CompaGB: An open framework for genome browsers comparison
Autor: Annie Gendrault, Hélène Chiapello, Thomas Lacroix, Jean-François Gibrat, Valentin Loux
Publikováno v: BMC Research Notes, Vol 4, Iss 1, p 133 (2011)
BMC Research Notes (4), 133. (2011)
BMC Research Notes
BMC Research Notes, BioMed Central, 2011, 4, pp.133. ⟨10.1186/1756-0500-4-133⟩
Background Tools to visualize and explore genomes hold a central place in genomics and the diversity of genome browsers has increased dramatically over the last few years. It often turns out to be a daunting task to compare and choose a well-adapted
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::32ccf503892868b8f8d868fac12aba68
http://www.biomedcentral.com/1756-0500/4/133
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8
Expressed sequences tags of the anther smut fungus, Microbotryum violaceum, identify mating and pathogenicity genes
Autor: Benjamin Devier, François Rodolphe, Hélène Chiapello, Patrick Wincker, Tatiana Giraud, Annie Gendrault, Roxana Yockteng, Carole Dossat, Sylvain Marthey, Michael E. Hood
Publikováno v: BMC Genomics
BMC Genomics, 2009, 8 (1), pp.272. ⟨10.1186/1471-2164-8-272⟩
BMC Genomics, BioMed Central, 2009, 8 (1), pp.272. ⟨10.1186/1471-2164-8-272⟩
BMC Genomics 272 (8), 12 pages on line. (2007)
BMC Genomics, Vol 8, Iss 1, p 272 (2007)
Background The basidiomycete fungus Microbotryum violaceum is responsible for the anther-smut disease in many plants of the Caryophyllaceae family and is a model in genetics and evolutionary biology. Infection is initiated by dikaryotic hyphae produc
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::160fef91cbd2492fb9b35c7093bc22ab
https://hal.science/hal-02333218/document
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9
FUNYBASE: the FUNGAL phYlogenomic database
Autor: Sylvain Marthey, Marc-Henri Lebrun, Tatiana Giraud, Annie Gendrault, Elisabeth Fournier, Manuela López-Villavicencio, Angélique Gautier, Hélène Chiapello, François Rodolphe, Gabriela Aguileta
Publikováno v: BMC Bioinformatics 456 (9), 1-10. (2008)
BMC Bioinformatics, Vol 9, Iss 1, p 456 (2008)
BMC Bioinformatics
BMC Bioinformatics, BioMed Central, 2008, 9 (456), pp.1-10. ⟨10.1186/1471-2105-9-456⟩
Background The increasing availability of fungal genome sequences provides large numbers of proteins for evolutionary and phylogenetic analyses. However the heterogeneity of data, including the quality of genome annotation and the difficulty of retri
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5b07c7c8752c7cfe601491586d10bec9
http://prodinra.inra.fr/record/42495
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10
MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level
Autor: Jérome Blum, Marie-Agnès Petit, Meriem El Karoui, Hélène Chiapello, Annie Gendrault, Christophe Caron
Publikováno v: 312, 2008, 9 (498), pp.on line
BMC Bioinformatics, Vol 9, Iss 1, p 498 (2008)
BMC Bioinformatics
BMC Bioinformatics 498 (9), on line. (2008)
BMC Bioinformatics, BioMed Central, 2008, 9 (498), pp.on line
Chiapello, H, Gendrault, A, Caron, C, Blum, J, Petit, M-A & El Karoui, M 2008, ' MOSAIC : an online database dedicated to the comparative genomics of bacterial strains at the intra-species level ', BMC Bioinformatics, vol. 9, 498 . https://doi.org/10.1186/1471-2105-9-498
Background The recent availability of complete sequences for numerous closely related bacterial genomes opens up new challenges in comparative genomics. Several methods have been developed to align complete genomes at the nucleotide level but their u
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::98f8f7ce57b6d2111ec2e1b99b8737ba
https://hal.archives-ouvertes.fr/hal-00490583
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