Zobrazeno 1 - 10
of 37
pro vyhledávání: '"Ann S Hammonds"'
Autor:
Katherine Taylor, Kurt Kleinhesselink, Michael D George, Rachel Morgan, Tangi Smallwood, Ann S Hammonds, Patrick M Fuller, Perot Saelao, Jeff Alley, Allen G Gibbs, Deborah K Hoshizaki, Laurence von Kalm, Charles A Fuller, Kathleen M Beckingham, Deborah A Kimbrell
Publikováno v:
PLoS ONE, Vol 9, Iss 1, p e86485 (2014)
Space travel presents unlimited opportunities for exploration and discovery, but requires better understanding of the biological consequences of long-term exposure to spaceflight. Immune function in particular is relevant for space travel. Human immu
Externí odkaz:
https://doaj.org/article/0532e9057d4d4690a966fbe263800474
Autor:
Majid Kazemian, Charles Blatti, Adam Richards, Michael McCutchan, Noriko Wakabayashi-Ito, Ann S Hammonds, Susan E Celniker, Sudhir Kumar, Scot A Wolfe, Michael H Brodsky, Saurabh Sinha
Publikováno v:
PLoS Biology, Vol 8, Iss 8, p e1000456 (2010)
Cis-regulatory modules that drive precise spatial-temporal patterns of gene expression are central to the process of metazoan development. We describe a new computational strategy to annotate genomic sequences based on their "pattern generating poten
Externí odkaz:
https://doaj.org/article/8623d3269ad24e4f923079e9b1f726d1
Publikováno v:
Molecular Systems Biology, Vol 6, Iss 1, Pp n/a-n/a (2010)
Discovery of temporal and spatial patterns of gene expression is essential for understanding the regulatory networks and development in multicellular organisms. We analyzed the images from our large‐scale spatial expression data set of early Drosop
Externí odkaz:
https://doaj.org/article/63318c380d624878a2ec0f9c6bd079e1
Autor:
Benjamin W. Booth, Charles McParland, Keith Beattie, William W. Fisher, Ann S. Hammonds, Susan E. Celniker, Erwin Frise
Publikováno v:
iScience, Vol 2, Iss , Pp 136-140 (2018)
Summary: High-content image acquisition is generally limited to cells grown in culture, requiring complex hardware and preset imaging modalities. Here we report an open source software package, OpenHiCAMM (Open Hi Content Acquisition for μManager),
Externí odkaz:
https://doaj.org/article/941e1a2272bc4dd9a0848d5053697ec6
Autor:
Jian-Hua Mao, Siti Nur Sarah Morris, Susan E. Celniker, James B. Brown, William W. Fisher, Kenneth H. Wan, Richard Weiszmann, Mark R. Viant, Benjamin W. Booth, Charles Yu, Soo Park, Ann S. Hammonds, Jennifer A. Kirwan, Sasha A. Langley, Antoine M. Snijders, Ralf J. M. Weber
Publikováno v:
Communications biology, vol 4, iss 1
Communications Biology
Communications Biology, Vol 4, Iss 1, Pp 1-12 (2021)
Communications Biology
Communications Biology, Vol 4, Iss 1, Pp 1-12 (2021)
The gut microbiome produces vitamins, nutrients, and neurotransmitters, and helps to modulate the host immune system—and also plays a major role in the metabolism of many exogenous compounds, including drugs and chemical toxicants. However, the ext
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1c1ffdcd0acbb5a2b1dcf15bed1102fc
https://escholarship.org/uc/item/15g832nr
https://escholarship.org/uc/item/15g832nr
Publikováno v:
Microbiology resource announcements, vol 9, iss 44
Microbiology Resource Announcements
Microbiology Resource Announcements
Lactobacillus brevis Oregon-R-modENCODE strain BDGP6 was isolated from the gut of Drosophila melanogaster for functional host-microbial interaction studies. The bacterial chromosome is a single circular DNA molecule of 2,785,111 bp with a G+C content
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::07897747cd711c10bd1d8e26c6209c0f
https://escholarship.org/uc/item/6c65j36t
https://escholarship.org/uc/item/6c65j36t
Autor:
William W. Fisher, Benjamin W. Booth, Susan E. Celniker, Keith Beattie, Ann S. Hammonds, Erwin Frise, C. P. McParland
Publikováno v:
iScience, Vol 2, Iss, Pp 136-140 (2018)
iScience
Booth, BW; McParland, C; Beattie, K; Fisher, WW; Hammonds, AS; Celniker, SE; et al.(2018). OpenHiCAMM: High-Content Screening Software for Complex Microscope Imaging Workflows.. iScience, 2, 136-140. doi: 10.1016/j.isci.2018.03.017. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/6c90r2zx
iScience
Booth, BW; McParland, C; Beattie, K; Fisher, WW; Hammonds, AS; Celniker, SE; et al.(2018). OpenHiCAMM: High-Content Screening Software for Complex Microscope Imaging Workflows.. iScience, 2, 136-140. doi: 10.1016/j.isci.2018.03.017. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/6c90r2zx
SUMMARY High-content image acquisition is generally limited to cells grown in culture, requiring complex hardware and preset imaging modalities. Here we report an open source software package, OpenHiCAMM (Open Hi Content Acquisition for μManager), t
Autor:
LaDeana W. Hillier, Mitch Corson, Martha Wall, D. Vafeados, Alec Victorsen, Robert H. Waterston, Robert Terrell, William W. Fisher, Susan E. Celniker, David Steffen, Matt Kirkey, Ann S. Hammonds, Koon-Kiu Yan, Mark Gerstein, Haneen N. Ammouri, Swapna Samanta, Samantha Seabrook-Sturgis, Madhura Kadaba, Lijia Ma, Soo Park, Jeffery Gersch, Matt Szynkarek, Michelle M. Kudron, Mei Han, Valerie Reinke, Kevin P. White, Jennifer L. Moran, Timothy Durham, Louis Gevirtzman, Jinrui Xu, Jaeda Patton, Nader Jameel
Publikováno v:
Genetics. 208:937-949
The model organism Encylopedia of Regulatory Elements (modERN) project was designed to generate genome-wide binding profiles for the majority of transcription... To develop a catalog of regulatory sites in two major model organisms, Drosophila melano
Autor:
Clara Henriquez, Hamutal Arbel, Mark D. Biggin, Susan E. Celniker, Kenneth H. Wan, James B. Brown, Sumanta Basu, Soo Park, Peter J. Bickel, Richard Weiszmann, Benjamin W. Booth, Ann S. Hammonds, Omid Shams Solari, William W. Fisher, Soile V.E. Keranen
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America, vol 116, iss 3
Proceedings of the National Academy of Sciences of the United States of America
Arbel, H; Basu, S; Fisher, WW; Hammonds, AS; Wan, KH; Park, S; et al.(2019). Exploiting regulatory heterogeneity to systematically identify enhancers with high accuracy. Proceedings of the National Academy of Sciences of the United States of America, 116(3), 900-908. doi: 10.1073/pnas.1808833115. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/6jt200hj
Proceedings of the National Academy of Sciences of the United States of America
Arbel, H; Basu, S; Fisher, WW; Hammonds, AS; Wan, KH; Park, S; et al.(2019). Exploiting regulatory heterogeneity to systematically identify enhancers with high accuracy. Proceedings of the National Academy of Sciences of the United States of America, 116(3), 900-908. doi: 10.1073/pnas.1808833115. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/6jt200hj
Significance We demonstrate a high-accuracy method for predicting enhancers genome-wide with >85% precision as validated by transgenic reporter assays in Drosophila embryos. This accuracy in a metazoan system enables us to predict with high confidenc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0a35a0f230f22332bdb66c91afb2e914
https://escholarship.org/uc/item/6jt200hj
https://escholarship.org/uc/item/6jt200hj
Autor:
Richard Weiszmann, Soo Park, Clara Henriquez, Hamutal Arbel, Peter J. Bickel, Omid Shams Solari, Susan E. Celniker, Kenneth H. Wan, Mark D. Biggin, James B. Brown, Soile V.E. Keranen, William W. Fisher, Ann S. Hammonds
Identifying functional enhancers elements in metazoan systems is a major challenge. For example, large-scale validation of enhancers predicted by ENCODE reveal false positive rates of at least 70%. Here we use the pregrastrula patterning network ofDr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e815b9560030612aff673afc2fac389d