Improved eukaryotic detection compatible with large-scale automated analysis of metagenomes

Autor: Wojtek Bazant, Ann S. Blevins, Kathryn Crouch, Daniel P. Beiting

Publikováno v: Microbiome, Vol 11, Iss 1, Pp 1-18 (2023)

Abstract Background Eukaryotes such as fungi and protists frequently accompany bacteria and archaea in microbial communities. Unfortunately, their presence is difficult to study with “shotgun” metagenomic sequencing since prokaryotic signals domi

Externí odkaz: https://doaj.org/article/cb35a02735874a11a76deb3e5a7bf3b0

Variability in higher order structure of noise added to weighted networks

Autor: Ann S. Blevins, Jason Z. Kim, Dani S. Bassett

Publikováno v: Communications Physics, Vol 4, Iss 1, Pp 1-12 (2021)

A common problem in reconstructing weighted networks to represent real-world systems is that low-weight edges might appear due to noise, affecting the topology of the inferred network. Here, the authors propose a method based on persistent homology t

Externí odkaz: https://doaj.org/article/aee7cd2648e549649747b3a17be0d7aa

From calcium imaging to graph topology

Autor: Ann S. Blevins, Dani S. Bassett, Ethan K. Scott, Gilles C. Vanwalleghem

Publikováno v: Blevins, A S, Bassett, D S, Scott, E K & Vanwalleghem, G C 2022, ' From calcium imaging to graph topology ', Network Neuroscience, vol. 6, no. 4, pp. 1125-1147 . https://doi.org/10.1162/netn_a_00262

Systems neuroscience is facing an ever-growing mountain of data. Recent advances in protein engineering and microscopy have together led to a paradigm shift in neuroscience; using fluorescence, we can now image the activity of every neuron through th

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f0ea1b2f68b7636fe0493e380dd34616
https://pure.au.dk/portal/da/publications/from-calcium-imaging-to-graph-topology(63b8aa99-1106-44a0-b012-a9d8af2e3412).html

Improved eukaryotic detection compatible with large-scale automated analysis of metagenomes

Autor: Wojtek Bazant, Ann S. Blevins, Kathryn Crouch, Daniel P. Beiting

BackgroundEukaryotes such as fungi and protists frequently accompany bacteria and archaea in microbial communities. Unfortunately, their presence is difficult to study with ‘shotgun’ metagenomic sequencing since prokaryotic signals dominate in mo

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2c6c907a48155e7521d01d30070bd7f8
https://doi.org/10.1101/2022.03.09.483664

Brain-wide visual habituation networks in wild type and fmr1 zebrafish

Autor: Emmanuel, Marquez-Legorreta, Lena, Constantin, Marielle, Piber, Itia A, Favre-Bulle, Michael A, Taylor, Ann S, Blevins, Jean, Giacomotto, Dani S, Bassett, Gilles C, Vanwalleghem, Ethan K, Scott

Publikováno v: Nature communications. 13(1)

Habituation is a form of learning during which animals stop responding to repetitive stimuli, and deficits in habituation are characteristic of several psychiatric disorders. Due to technical challenges, the brain-wide networks mediating habituation

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::73b8769a5031e363cec57338da44f19e
https://pubmed.ncbi.nlm.nih.gov/35173170